| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3018 |
|---|
| Symbol | |
|---|
| ID | 8138364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 3505119 |
|---|
| End bp | 3506705 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644870619 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_003022805 |
|---|
| Protein GI | 253701616 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 107 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGG TGAAACTGTA CGATACGACG CTTAGGGACG GAACGCAGGC AGAAGACATC
TCTTTCCTGG TGGAGGACAA GATCCGCATC GCCCACAAAC TGGACGAGAC CGGCATCGCT
TACATAGAAG GAGGGTGGCC CGGCAGCAAC CCCAAGGACG TCGCCTTCTT CAAGGACATC
AAGAAAGAGA AGCTCTCCCA GGCGAAGATC GCGGCTTTCG GCTCCACCAG GCGCGCCAAG
ATCACCCCGG ACAAGGATCA GAACATCCGC ACCCTGGTGC AGTCCGAGGC GGACGCGGTC
ACCATCTTCG GCAAGAGCTG GGACTTCCAG GTCCACGAGG CGCTCAGGAT CCCGCTCGAG
GAGAACCTGG AGCTGATCTT CGACTCGCTG GAGTACCTGA AGGCGCGCAT GCCCGAGGTG
TTCTACGACG CCGAGCACTT CTTCGACGGC TACAAGGCCA ATCCTGAGTA CGCCATCAAG
ACGCTGCTGG CGGCACAGCA GGCGGGTGCG GACTGCATCA TCCTTTGCGA CACCAACGGC
GGCACCATGC CCTTCGAGAT CGCCAGCATC GTGGCCGAGG TGCAAAAGGC GGTCTCCACC
CCGCTCGGCA TCCACACCCA CAACGACGGC GAGTGCGCCG TCGCCAACTC GATAGTCGCG
GTGCAAAGCG GCATCGTCCA GGTGCAGGGG ACCATCAACG GGTTCGGCGA GCGCTGCGGC
AACGCGAACC TCTGCTCCGT CATCCCGGCC CTCAAGGTGA AGATGAATAT GGGGTGCGTG
AGCGACCAGC AGATGCGCCA GTTGCGCGAC CTCTCCCGCT ACGTCTACGA ACTGGCGAAC
CTGGCGCCCA ACAAGCACCA GGCCTACGTC GGGAACTCCG CCTTCGCCCA CAAGGGTGGG
GTGCACGTCT CCGCCATCCA GCGCCACCCC GAAACCTACG AGCACATGAG GCCGGAGTTG
GTGGGAAACA GCACCCGCGT CCTCGTCTCC GACCTCTCCG GTCGCGCCAA CATCCTCGCC
AAGGCGACCG AATTCAACAT CAACCTGGAC AGCAAGGATC CGGTGACCCT GGAGATCCTG
GAAGACATCA AGGCGATGGA GAACCGCGGC TACCAGTTCG AGGGGGCGGA GGCGTCATTC
GAGCTCCTGA TGAAGCGCGC GCTCGGCACG CACCGCAAGT TCTTCTCCGT GATCGGCTTC
AGGGTCATCG ACGAGAAGCG CCATGAGGAC GAGCAGCCGA TCTCCGAGGC CACCATCAAG
GTGAAGGTGG GGGGGAAGAT CGAGCACACG GCGGCGGAAG GGTCCGGCCC TGTCAACGCG
CTCGACAACG CGCTCAGGAA GGCGCTGGAG AAGTTCTATC CCAAGCTTCG GGACGTGAAG
CTGCACGACT ACAAGGTAAG GGTGCTCCCG GCAGGGCAGG GGACGGCCTC CTCGATCCGG
GTGTTGATCG AGTCCGGCGA CAAGGAAGGG CGCTGGGGGA CCGTCGGTGT CTCCTCCAAC
GTCATCGAGG CCTCCTACCA GGCGCTGGTC GACGCCATAG AATTCAAGCT CCACAAGGAA
GAGGAGGCGG CGGCGCCGAA ACAGTGA
|
|---|
| Protein sequence | MSLVKLYDTT LRDGTQAEDI SFLVEDKIRI AHKLDETGIA YIEGGWPGSN PKDVAFFKDI
KKEKLSQAKI AAFGSTRRAK ITPDKDQNIR TLVQSEADAV TIFGKSWDFQ VHEALRIPLE
ENLELIFDSL EYLKARMPEV FYDAEHFFDG YKANPEYAIK TLLAAQQAGA DCIILCDTNG
GTMPFEIASI VAEVQKAVST PLGIHTHNDG ECAVANSIVA VQSGIVQVQG TINGFGERCG
NANLCSVIPA LKVKMNMGCV SDQQMRQLRD LSRYVYELAN LAPNKHQAYV GNSAFAHKGG
VHVSAIQRHP ETYEHMRPEL VGNSTRVLVS DLSGRANILA KATEFNINLD SKDPVTLEIL
EDIKAMENRG YQFEGAEASF ELLMKRALGT HRKFFSVIGF RVIDEKRHED EQPISEATIK
VKVGGKIEHT AAEGSGPVNA LDNALRKALE KFYPKLRDVK LHDYKVRVLP AGQGTASSIR
VLIESGDKEG RWGTVGVSSN VIEASYQALV DAIEFKLHKE EEAAAPKQ
|
|---|
| |