| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_2978 |
|---|
| Symbol | |
|---|
| ID | 8138321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 3459961 |
|---|
| End bp | 3460848 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644870576 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_003022765 |
|---|
| Protein GI | 253701576 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 9.09603e-22 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACG GTTTTTTCGT GATCGACAAG CCGGCCGGTG TCACCTCGCA TGACATCGTG
TCGAAGGTGC GTCGCGCCAT CAACCAGAAA AAGGTGGGGC ACACCGGAAC GCTCGACCCC
TTCGCCACAG GCGTTCTGCC CGTTGCCGTA GGCGAGGGGA CAAAGGCGAT CCAGTTCCTG
GACGAGTCGG AGAAGGAGTA CCGCGCCGTG ATGAGGCTCG GTATCGCCAC CGACACCCAG
GACCTGACCG GCCAGGTGCT GGCGGAGCGC GACTGGTCGC ACTTGGAGGC AACCGACCTG
GAGCGGCTGG TGCCGCGGTT CCTGGGTCTC CAGAAGCAGA TGCCTCCCAT GTTCTCGGCC
ATCAAGCAAG GGGGGGTTCC GCTCTACAAG CTGGCGAGAA AGGGAATCGA GGTGGAGCGC
GAGGCGCGCG AGGTGGAAAT CCACTCACTT CACTTCGACT GGATCCGCCT CCCCGAGGCG
TGCTTCACCG TTACCTGCTC GCGCGGCACC TACGTGAGGA CCCTTGCCTG CGATATCGGC
GAGGCTCTTG GGTGCGGGGC GCACCTGTTG GAGCTGCGGC GTACGAGGAG CGGGCTTTTT
CTCGAAAAAG ACGCCATCAG CATCGAGGCC CTGGCTGCGG CTGCGAACCA GCAGGAGCTG
ATCCTCCCGC TGGACCGGGC GCTTGACCAC CTGCGCAGGT TGGAGCTGTC CGAGGCGGGG
GGGATAAAGG TGCGAAACGG CGTGGCGCCG CTAGCTGCTG ATTTCACCGG TGCGACTGGA
GAGTTTCAGC AGGGCGAACA GGTGCGACTC TATCAGGGGG AGCGCTTTGC TGCAGTAGCC
GAGTACGACA TGCTCAAAGG GCTGCGATTG GCGCGTGTAT TCAACTAG
|
|---|
| Protein sequence | MLNGFFVIDK PAGVTSHDIV SKVRRAINQK KVGHTGTLDP FATGVLPVAV GEGTKAIQFL
DESEKEYRAV MRLGIATDTQ DLTGQVLAER DWSHLEATDL ERLVPRFLGL QKQMPPMFSA
IKQGGVPLYK LARKGIEVER EAREVEIHSL HFDWIRLPEA CFTVTCSRGT YVRTLACDIG
EALGCGAHLL ELRRTRSGLF LEKDAISIEA LAAAANQQEL ILPLDRALDH LRRLELSEAG
GIKVRNGVAP LAADFTGATG EFQQGEQVRL YQGERFAAVA EYDMLKGLRL ARVFN
|
|---|
| |