Gene GM21_2816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_2816 
Symbol 
ID8138159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp3276084 
End bp3277859 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content63% 
IMG OID644870418 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_003022607 
Protein GI253701418 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones95 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGCAGG TCGCTGACAT AACGAGGATG GAAGGGACTA CCGGCTGCGG CGACGCTTCG 
GGAATCGTGA GGCTCGACGC CGATCTCGGC ATCACCTACC TCGACGCGGC CGCCGCCACC
TTGATTGGGA TGCCCGTGGA GAGCCTTTTG GGGCGCAGGC TAGACGAGGT GGCGGATCTC
TCCGAACTCA GCACCCTGAT GAAAAGCGGC ACCGTGTTCA ACAACCAGAC GCTTCTAGCC
GGCAAGAGGC GCCTTGTCTG CGACTATCTC CCGAGCATGG AGTCCGAGCA ACTTGTGGGG
GGAATTTTAT CCGTCCTGCG GCTCCTCCCG GAACAGCTCC CCGATCCCTC CATCGATTTG
AGGGCCCTCT TGCAGTCGGC GAGCGCCTCC CTCGACCTCA ACTACGACGG CATCATCATC
GTGGACCGGG AAGCGGTGGT GGTCATGGTG AACAAGGCCT TCGCCGAAAT CCTCGACACC
ACCCCCCAAG CCATCATCGG CAAGCACGTA AGCAGCGCCT ACCCGAATTC CCAGTCTTCG
AAGCTGCCGG CGGTCATGGA GAGCGCCACC GCGCAGGTCG GCATCACCCA TTACCTTAAC
GGCAAGCAGG TCTACGCTTC GCTCTACCCC ATCATCAAGG ACGGCCAGGT GATCGGAGGG
GTCGGCAAGA TCCTCTTCAA GGACATCCGC GAGATCACCC TGATCGCGAA CCGGCTGCAG
GGCGCTTCCG AGACGCGCGC GGCGGCCGGG AGCGTGGCGC GCAAGGAATC GATGTCGCGC
TACGACATGA ACAACATCGT CGGGCAGAGC AAGATAATGC AGGACCTGAA GGAGGCCCTG
CTTCGGGTGG CCTCCAAGAA CTCGAACATC CTCCTTCTGG GGGAAAGCGG GACCGGGAAG
GAGCTTTTCG CCCACGCCAT CCACGCCGCC AGCAACCGCC GGTACGCCCA GTTCGTCAAG
GTGAACTGCG CGGCGATTCC CGAGCATCTG CTGGAGTCCG AACTCTTCGG CTACGCCGAG
GGGGCCTTCA CCGGGGCGAG GAAAGGGGGG CAGCTGGGGA AATTCGAACA GGCGCACCTG
GGGACCATCT TTCTGGACGA GATCGGCGAT ATGCCGCTGT ACATGCAGGC GAAGATGCTG
CGGGTCCTGC AGGAGAGGGA GCTGACACCC CTGGGGAGCA ACGCCCCCAA GACGGTCGAC
GTGAGGGTGG TCGCCGCCAC CAACAGCAAC CTGGAGGCCC TGGTGCGGGA GGGAAAGTTC
CGGCAGGACC TCTACTATCG CCTCAAGGTG GTGACGCTCT GCATCCCCGC GCTCAGGGAG
CGCAAGGAAG ACATCCGCGC CCTCAGCGTG AATTTCATCC AGCAGTTCAA CGAGGAATTC
GGGCTGGAGG TCCAGGGGCT GAGCCTGGAG GCCCGCGACG TGGTCATGCA CTACGACTGG
CCGGGGAACG TGAGGGAGCT GCGCAACGTG ATCGAGAGCG CCTTCAACGT GGTGACCGGT
CCGCTCATCC TCAAGGAGCA CCTCCCGGAC CAGCTCTCCA GGATGCTCCG TGACGGCAGC
TCGGGTATCC CGCATGACAT CGGCCCCTAC CTGCGCGCGA GGCTTGGGAG CAAACCGCTT
CCAGCCATCG TCGAGGAGTT CGAGAAGCTG CTGGTGGAGG CCGCCATCGA GTTTTGCAAC
GGCAACAAGC TGCAGGCCGC CGATCTGCTC GGCATCTCCC GGCAGTGGCT GTACAAGAAG
CTGCAGAAGC ATCACGACGA CTCTTCCGAC AGATAA
 
Protein sequence
MVQVADITRM EGTTGCGDAS GIVRLDADLG ITYLDAAAAT LIGMPVESLL GRRLDEVADL 
SELSTLMKSG TVFNNQTLLA GKRRLVCDYL PSMESEQLVG GILSVLRLLP EQLPDPSIDL
RALLQSASAS LDLNYDGIII VDREAVVVMV NKAFAEILDT TPQAIIGKHV SSAYPNSQSS
KLPAVMESAT AQVGITHYLN GKQVYASLYP IIKDGQVIGG VGKILFKDIR EITLIANRLQ
GASETRAAAG SVARKESMSR YDMNNIVGQS KIMQDLKEAL LRVASKNSNI LLLGESGTGK
ELFAHAIHAA SNRRYAQFVK VNCAAIPEHL LESELFGYAE GAFTGARKGG QLGKFEQAHL
GTIFLDEIGD MPLYMQAKML RVLQERELTP LGSNAPKTVD VRVVAATNSN LEALVREGKF
RQDLYYRLKV VTLCIPALRE RKEDIRALSV NFIQQFNEEF GLEVQGLSLE ARDVVMHYDW
PGNVRELRNV IESAFNVVTG PLILKEHLPD QLSRMLRDGS SGIPHDIGPY LRARLGSKPL
PAIVEEFEKL LVEAAIEFCN GNKLQAADLL GISRQWLYKK LQKHHDDSSD R