Gene GM21_1825 details

Gene Information

• Locus tag: GM21_1825
• ID: 8137156
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: -
• Start bp: 2123721
• End bp: 2125649
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 644869436
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_003021636
• Protein GI: 253700447
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2208] Serine phosphatase RsbU, regulator of sigma subunit
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 49
• Fosmid unclonability p-value: 0.000986123
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTAAAAC CGCTTCGCGT GCTGATAGTG GAAGACTCGG AGGACGACGC GCTGCTGCTC 
GTCTTCGAGC TGCGTCGCGG CAACTATGCT CCGGTAACCA TGCGCGTGGA GAACTCCGAC 
TCTTTGCGCA AGGCGCTCAA GGAGGAAACC TGGGACCTGG TCATCTCCGA CTACGTCCTT 
CCCGGCTTCT CGGGGTTGGA CGCGCTGAAG CTGGTGCGTG CCTCGGGGAT GGACCTTCCC 
TTCATCATCG TTTCCGGGAA AATCGGCGAG GAAGACGCCG TAAAGGCCAT GAAGGAGGGG 
GCGAACGATT ACCTGATCAA GGGTAACACC TCGCGCCTCA TCCCTGCCAT CGAGCGGGAG 
ATGCAGGAGG CCGAGGTGAG GCGCAAGCGG CGCGAGGCCG AGTCGGCGCT GGTGAGAAGC 
GAGCGGCGCT ACAAGAGGCT GGTGTCGGCG GTCACCGATT ACATCTATAC GGTGATCATC 
CATAAAGGAG CGGTTGTTAA AACCTCGCAC GGACCGGGAT GTCTCTCGGT GACCGGCTAC 
AGCCACGAGG AGTACGTCGA CAACCCTTTT TTGTGGTACC AGATGATCTA CGAGGAGGAC 
CGGAGCGCGG TGACGAGCCT CACCGAGGAC CTGCGGGCGG GAAAAGACAT CCCTTCGCTG 
GAGCACCGGA TCCGGCACAA AGACGGCTCG CTGCGCTGGG TCATCAACAC CATCGTCCCA 
CGCTACAGCG AACAGGGCGA ACTGATCGCC TACGACGGCC TCATCTCGGA CATCTCGGAG 
CGAAAGCGCG CCGAGGAGTC GCTGCAGCTT CAAAGCGCGG CGTTGGAGGC GGCGGCCAAC 
GCCATAGTCA TCACGGACAG CAGCGGGGTC ATCATCTCGG TAAACGAGGC TTTCACCGGC 
ATGACCGGGT ACGGCCGCGA GGAGGCCCTA GGGCGCGATC TGAGTTTCCT GAAATCGGAG 
CGGCACACTT CGGAGTTTTA CCGCTGCCTC AGGGAAACCA TCAGCGCCGG CGAGGTCTGG 
CACGGAGAGA TGATCAACCG GCGCAAGGAC GGCACCCTCT ACCCCGAGGA GCAGACCATC 
ACGCCGGTTT TGGACGAAGA CGGGCGCATC AACCACTTCA TCTGCATCAA GCAGGACATC 
ACCGAGCGCA AGCAGGCAGA GCAGGCGCTG ATGCAAAACG CCAGCATGCT GAAGGAAATG 
GAGATCGCGA AGCAGATCCA GATGTCTTTG CTTCCGGTCA CCCCCCCCTG CCTCCCGGGC 
ATCGACTGCG CCGGGAACTG CTCCCCCGCC AACAACATCG GCGGCGACTA CTACGACATC 
CTCCCGCACG GAGAAGAACT CGACCTCGTC ATCGCCGACG TCTCGGGCCA CAGCGTCGGC 
GCCGCGCTGA TCATGGTCGA AACCCGCAGC GTACTTCGCG CGCAGCTTGC GACCTTGAAG 
GGGCCGGCCG AGATTGTGTC GGCCCTGAAC GAACTGCTGC ACGAGGACCT GAGTCGGGCC 
GAACTCTTCA TCACCATGTC GTACCTGAGT TACCACATCC CCACCGGCAC GCTCCGCTAC 
ACCAACGCCG GCCATCCCCC TCCCCTGCTC TACCGCCACC AAACCGACCA GTTTTTCGAG 
TTGGACGCCG AAGGGCTCAT CCTGGGGGTA CACCGGGAGG TGTTCTTCCA GGAGCCCTCG 
CTCCAGGTCC GGGACGGGGA CCTGCTGCTT CTCTATACCG ACGGCATCAC TGAAGCGGAA 
AACCGCGAGG GCGGGTTCTT CGGCATTGAT AGATTGCGGC AAGTAGTGGC GCGCGAGCAT 
ATGAAACCGG CAGCGGGAGT GATCGCCGCA GTCATGGAAT CCGTCAGGAC CTTCACCGGC 
TGCGACGCCT TCAACGACGA CATCTCTATG CTTCTTATCA AATTCGTCCC CGTAACCCCC 
CATTCTTAG 

 

Protein sequence

MVKPLRVLIV EDSEDDALLL VFELRRGNYA PVTMRVENSD SLRKALKEET WDLVISDYVL 
PGFSGLDALK LVRASGMDLP FIIVSGKIGE EDAVKAMKEG ANDYLIKGNT SRLIPAIERE 
MQEAEVRRKR REAESALVRS ERRYKRLVSA VTDYIYTVII HKGAVVKTSH GPGCLSVTGY 
SHEEYVDNPF LWYQMIYEED RSAVTSLTED LRAGKDIPSL EHRIRHKDGS LRWVINTIVP 
RYSEQGELIA YDGLISDISE RKRAEESLQL QSAALEAAAN AIVITDSSGV IISVNEAFTG 
MTGYGREEAL GRDLSFLKSE RHTSEFYRCL RETISAGEVW HGEMINRRKD GTLYPEEQTI 
TPVLDEDGRI NHFICIKQDI TERKQAEQAL MQNASMLKEM EIAKQIQMSL LPVTPPCLPG 
IDCAGNCSPA NNIGGDYYDI LPHGEELDLV IADVSGHSVG AALIMVETRS VLRAQLATLK 
GPAEIVSALN ELLHEDLSRA ELFITMSYLS YHIPTGTLRY TNAGHPPPLL YRHQTDQFFE 
LDAEGLILGV HREVFFQEPS LQVRDGDLLL LYTDGITEAE NREGGFFGID RLRQVVAREH 
MKPAAGVIAA VMESVRTFTG CDAFNDDISM LLIKFVPVTP HS