Gene GM21_1624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_1624 
Symbol 
ID8136955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp1889238 
End bp1891367 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content63% 
IMG OID644869237 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003021437 
Protein GI253700248 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones145 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAACC GCACCGCCAT TGCAGCAGCC GCCGTACTTT TCTGCACCGC CCTTCCCGCC 
TCAGCAGTGA CCTTCAAGCC CGCCGACGAA GCCCTGGCAA GCGCCGCCTC CCGCATGCAG
GCCAAGGATT ACCGCACCGC GAAAGAAGCC GCGTCGAAAG TAAACGACAA AGGCGTCCGC
AGCTTCATGG TCGGCATGGC GGCGGCCCGG CTGGAGCAGT GGGAGGAGGC GGCAGGCCAG
CTTGCCACCG CGGCGGATGC CTACCCCATC CTCGCCGATT ACGCGCTCTA CTACCAGGGG
CTCTCCCTAA CCAAGCTGGA GCGGCACGAT CAGGCTCTCA CTCCCTTGTA CCGGCTCCTC
AAGCAGTACC CCGAAAGCCG CCTGGTGCGC GCAGCCCTCA TCCTGTACTC CGACACCCTC
GCGGCGGCCG GGCACTACAA CGAGGCTCAA CAAAGCTACT CCACCTTCGT CGAGCGTTAC
CCGTTGGGCA ACGACTCCAT CTCCGCGCTC TACGGTTCCG CCCTTTGCAA GGAGAAGCTG
GGCGACCCGA TTGCGGCGGC GAAAGCCCTG CGCGGCATCT ATCTCAACTA CCCCGCCTCC
CCGTTTTCCG ACAAGTCCGC CCGCGACCTG CAAAGGCTTG GAAGCGCCGG TACCAGGGTC
GAGCCGTACA CCGGCGCCGA ACTCTTCAAG CGCTGCGGCA CGCTGTACGG ACTGAGACGC
TATCTGCAGG CAGCAGAGGC CTACGCGGAG ATACCGCTTT CCGGGGAGAG CGCCGAATTC
ATCGCCAAAC TCAAGCTGAA GAAGGGACAG GCGCTCTATA AGGCAAGGCG CTACAAGCAG
GCGCAGGCGA CCTTCTCCAA CATCTCCGGC GCCCGCCACG AATCCGACCT CTGGCTGGCG
CGGACCCTGG ACAAGACCGG GGAACAGACA GAAGCCTTCA AACTGTACAT GCAGCTGGCG
CAGGACTCCG ACAGTGGAAG CACCGGACAG GAGGCGCTCT TGGAGGCGGC GTACCTGAAA
AGGTTCCAGC GCAAATGGAG CGAGGCACTG CCGCTTTTCA AGCAATACCT GACAGCCGTG
CACCAAAAAC CGTCCAACGT GCTCTGGGAG TCCGCCTGGG CCAGCTACCA GTCCCGCGAT
TACGAAGACG CCGCCGCGCA GTTCAAAAAG CTCACCGAGC GCGAGGACCT GCGGGACAAG
GCGCTCTACT GGCTGGGCAA GACCCTCGCC GCCGCCGGCG ACGCCAAAGG TGCGCAGCAG
GCGTTCTCGA CCCTGGCAGC GGAATTCCCG CTCGGGTATT ACGCCCTGAT CAGCAACAAC
CACGCGGGCG AAGAGCTCCC GCTCCCCCCA AAGAGCATCA TGGAGGTCCT CCCCATGCCT
TCCGGTTTCG AGCGGGAAAA GGCGCTGATC TCGCTCGGAT TTTACGATGA GGCGGTCAGG
GAACTCTCGA TCGGCAAGAA GAACAGGAGC GCGGCGGGGA TCGCCCGGCT CCACCTGGAG
ATGGAGAACT TCAACGGCGC CTTCCACGCC ATGTCCAAGG AGAAGCCAAA GCGCGGCGAC
AAGGACAGCG CCACCATCTG GGGGGTCACC TATCCGCTCG CATACAAAGA CGACGTAGCG
CGCCACGCCG CCGCGAACGC CATACCCGAG AGCCTCGTCT ACGCCGTCAT GCGCGCCGAG
AGCAACTACT TCCCGGCGGC CCTCTCGCCC GTCGGCGCCG TAGGGCTCAT GCAGATCATG
CCCGCCACAG CCGAATCGAT GTCGAAAGGG GATTCGAAGC GCCTGACCAG TCCGGAGCTG
AACATAAGGC TCGGAACCCG TCACCTCAAA GACCTGCTTG ATAGCTACGA CCGCAACCTA
ACCCTCACCA TCGCCGCCTA CAACGCCGGC TCCGGCAACG TGAAAAGGTG GCAGAAAGGG
TACGGGCACC TGCCGCAGGA CGAATTCGTG GAGAGCATCC CCTTCAGGGA GACGCGCGAG
TACGTGAAGA AAGTGGTGAC GGGGATGGAG ATGTACCAGC GGTTGTACCG CCTCCCCCCC
TACCAGCAGC CAAACCTGCA TAAGAAGGTG AGCCCCGCAA GCGAGCGGCC GGGCGAACAG
AAAGTAGCGC AGGCGGGTTC GACACAGTAG
 
Protein sequence
MFNRTAIAAA AVLFCTALPA SAVTFKPADE ALASAASRMQ AKDYRTAKEA ASKVNDKGVR 
SFMVGMAAAR LEQWEEAAGQ LATAADAYPI LADYALYYQG LSLTKLERHD QALTPLYRLL
KQYPESRLVR AALILYSDTL AAAGHYNEAQ QSYSTFVERY PLGNDSISAL YGSALCKEKL
GDPIAAAKAL RGIYLNYPAS PFSDKSARDL QRLGSAGTRV EPYTGAELFK RCGTLYGLRR
YLQAAEAYAE IPLSGESAEF IAKLKLKKGQ ALYKARRYKQ AQATFSNISG ARHESDLWLA
RTLDKTGEQT EAFKLYMQLA QDSDSGSTGQ EALLEAAYLK RFQRKWSEAL PLFKQYLTAV
HQKPSNVLWE SAWASYQSRD YEDAAAQFKK LTEREDLRDK ALYWLGKTLA AAGDAKGAQQ
AFSTLAAEFP LGYYALISNN HAGEELPLPP KSIMEVLPMP SGFEREKALI SLGFYDEAVR
ELSIGKKNRS AAGIARLHLE MENFNGAFHA MSKEKPKRGD KDSATIWGVT YPLAYKDDVA
RHAAANAIPE SLVYAVMRAE SNYFPAALSP VGAVGLMQIM PATAESMSKG DSKRLTSPEL
NIRLGTRHLK DLLDSYDRNL TLTIAAYNAG SGNVKRWQKG YGHLPQDEFV ESIPFRETRE
YVKKVVTGME MYQRLYRLPP YQQPNLHKKV SPASERPGEQ KVAQAGSTQ