Gene GM21_0943 details

Gene Information

• Locus tag: GM21_0943
• ID: 8136264
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: +
• Start bp: 1117060
• End bp: 1119021
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644868558
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_003020767
• Protein GI: 253699578
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5010] Flp pilus assembly protein TadD, contains TPR repeats

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 0.0000000395442
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAAAAAA GACGCAAGTT AGCAAAGCTT GAGCCGCAAG CCGGGCCGAA GGCACCGCCC 
GCGGCCGAGG AGGAGTTGAA CCTCTGGCGC GATCCCCTGG TTCATGTCCT GCTGGTGCTG 
GCGCTGGGCT TCGCGGTCTA CTCGAACATC ATAGCCGCGC CGTTTGTCTT CGACGACCTC 
CCTTGCCTGG TCAACAACCC GATCATCAAG GACTTCTCCT TCTTCGCCGA CCCGAAGCAG 
GTGTTCGGGC TCCCGATCAA CCCGGACCTG AAGAACAACT TCATCCTGCG CCCGGTAGCC 
TACTTCACCT TCGCGCTGAA CCACGCCTTG CACGGGCTGG ACGTGCGGGG TTACCACATC 
GTCAACCTCC TGCTGCACAT GGCCGACGCC CTGCTGGTGT ACCTCGTTTC GTGGCTCACC 
CTGAGGACGC CGGCGCTGCA ACCGGAGCAG GGTAAAGAGG CGGATCCCCC GACGGAGAAA 
TACTTCTATC TCCCGTTTCT GGCGAGCCTT TTGTTCGTCT GCCACCCGCT GCAGACGCAG 
TCGGTCACCT ACGTGGTGCA GCGCTTCGTA CCCCTGGTCG CCTTTTTCTA CCTGGGGTCG 
CTGGCGCTGT ATGCCGCGGC GAGGCTCTCG GAGACAAAGG GGATTCGGGT CGGCTGCTAC 
CTCGGCTCGC TTTTCGCCTG CGTCCTCGCC ATGAAGAGCA AGGAAAACGC CTTCACCCTC 
CCGGCGGCGA TCGTGCTGTA CGAGTTCGTC TTCTTCCGGG GCGCGGTCAC CGCCGCCCGG 
CTCGCGCGGC TGGTCCCGTT CCTCTTCACC ATGGCGATCA TCCCAGTCAA GCTGATGTCT 
CTCTCGGCCA TGGCTGCCAC GGGGGGCAAG GTGGCCGGTG CTGTCAACCT AATCAATTTC 
AAACAGACCT CCCCCTGGGA ATACCTGATG ACGCAGTTCG GGGTGATAAC GACCTACTTG 
CGGCTGCTCA TCCTGCCGGT CAACCAGAAC TTGGATTATC AGTACCCGCT GCAGAAGGTT 
TTCCTCGCCC CGGCCGTAGT CCTGCCGCTG CTTTTGCTGC TGGCGCTGGC AGCCGGGGGT 
ATTTATCTTC TGGCGACCTC GCGCAGGGGA GACGACCGGG CCGGCATGCG CGCGCTGGCC 
GGCTTCGGCA TCTGGTGGTT TTTCATCACC CTCAGCGTCG AATCGAGCGT GGTGCCGATT 
GACGACGTCA TCTTCGAGCA TCGGGCCTAC CTGCCGTCGG TAGGATTCTT CATCGCCCTG 
CTCGCCGCGG CGTTCTCCCT CCCCCCCCGC TTCGGCGGGA CCCCGCTTTG CACCTCGCGC 
CCAGCGGTCG CCGTTTTCGC CTTCCTGGTA CTCGCCAGTT CAGTCGCCTG CTACCTGCGA 
AACGAGGTGT GGACGACGCC GGTGGCCCTG TGGCGGGACA CGGTGCAGAA GAGTCCGGGA 
AAGGGGAGGG CGCACTTCTC CCTGGGGTTC GCGCTGGCCA ATACCCTGCC TCCCTGGCAC 
ACCGACGACA TCAACGTGAT GCTCCAGCCC ATGGACGCCG CCCAGAACCA GGTGCTGGCG 
GAAGCGGTCC GGGAGTTCCG CGCCTCGACG AAGCTCGAAC CCGAATCGGC GGCCGGATAT 
TCATTCCTGG GGGCGGCGCT GATGGTGCAA CGGAAGTTCG ACGAAGCGGC GGCCGCATTG 
GCGACCGCCG CCGCGCTCGA TCCGAAGGAC GCAAGGACCC GCGCGTTTCT CGGGCAGTTG 
AGCGAGGCCC GGGGGGATCT TGCCGCCGCT CGCCTCCAGT ACCGGCAGGC CCTTTCTCTC 
AGCCCCCGGG AGCCCTTCCC GCATCTGTTC CTGGCGCTTC TCTCCCTGCG AGAGGGGAGG 
CACGCCGAGG CACTTAAGGA GTACGAGATC GCCCACCGGC TCGCTCCCCG CCCCGACCTG 
GAGCCGAAGA TGGCGCAGTT GAGATTCATG GTGGGACGAT GA 

 

Protein sequence

MKKRRKLAKL EPQAGPKAPP AAEEELNLWR DPLVHVLLVL ALGFAVYSNI IAAPFVFDDL 
PCLVNNPIIK DFSFFADPKQ VFGLPINPDL KNNFILRPVA YFTFALNHAL HGLDVRGYHI 
VNLLLHMADA LLVYLVSWLT LRTPALQPEQ GKEADPPTEK YFYLPFLASL LFVCHPLQTQ 
SVTYVVQRFV PLVAFFYLGS LALYAAARLS ETKGIRVGCY LGSLFACVLA MKSKENAFTL 
PAAIVLYEFV FFRGAVTAAR LARLVPFLFT MAIIPVKLMS LSAMAATGGK VAGAVNLINF 
KQTSPWEYLM TQFGVITTYL RLLILPVNQN LDYQYPLQKV FLAPAVVLPL LLLLALAAGG 
IYLLATSRRG DDRAGMRALA GFGIWWFFIT LSVESSVVPI DDVIFEHRAY LPSVGFFIAL 
LAAAFSLPPR FGGTPLCTSR PAVAVFAFLV LASSVACYLR NEVWTTPVAL WRDTVQKSPG 
KGRAHFSLGF ALANTLPPWH TDDINVMLQP MDAAQNQVLA EAVREFRAST KLEPESAAGY 
SFLGAALMVQ RKFDEAAAAL ATAAALDPKD ARTRAFLGQL SEARGDLAAA RLQYRQALSL 
SPREPFPHLF LALLSLREGR HAEALKEYEI AHRLAPRPDL EPKMAQLRFM VGR