| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0919 |
|---|
| Symbol | |
|---|
| ID | 8136240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1095071 |
|---|
| End bp | 1096750 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644868535 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003020744 |
|---|
| Protein GI | 253699555 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 6.4473e-32 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATGC CCCTCTTCCG GCTGCTCTGT CTGGTCGCGA CCGCCATCTC CTTTCTGGTC
ATCATCCCGA CAAACTACCT GCATCACCGC CCCGCCGAGA TAAACGCCGC CGTCTTCTGC
TTCGGGCTCA GCGCGCTCTG GCTCTTCCGC CGCGCCTGCC AGGGAAAGCA CCACCTCAAG
TCCTTCTTCT TCCTGCTGCT TCTCCTGCTG AACCTGGTCT GGTTCCCAAG CGGCGGGACC
AGCGGGAGCT CTGGCTATTT CTTTTACTGC CTCTTCCTCT ACCCCCCTAT CTTTTACCGG
GGCAAGACGC GCTGGCTGCT TCTTGTCCTC GCGGTTGCCG ACGCGGTGAT GCTGCTGGCC
GCAGAGATCG TTTTCCCGGG CTCCGTGGTC CATTACGCCG CCGCTTATGA CAGGACGGCG
GATCTGGCCG TAGGCCTCGT GATGAGCGCG TTTTGCTGCT CAATGATGTT GTGGCTGCTT
TTGGAGCAGC ACGACCGCGA GCAGCGGCGG CTTATGTCGC TGAACGAGGA GCTGCGCATG
GCCATGGACG ACCGGGCCTG CGTCGAGAGC TCCATGCTGC AAAATCGCGA GCTGCTGCAC
GCGGTGATCG AAGGGACCAC GGACGCGGTC TTCGTCAAGA ACCTGCAGGG GCAGTACCTC
CTCTTCAACC GGGCGGCCGA GGCCATGACA GGGGTAAGCG CCGGCCAGGC GCTGGGAAAC
GACGATCACG CCGTTTTCCC TCCGGATGTG GCGCAAAAGG CGATGGCGAA GGACCGATAC
GTCCTGGAGA CCCGCGAGCC TCAGACCAAC GAGGTCAATT TAGCTTCTCC CGACGGGGAG
ACGAGGATCT TCGAGGCGAT CAAGGGGCCG CTGCAGGACG GCAAAGGAAA CCTCGTCGGC
GTTTTCGGGA TCTCCAGGGA CGTCACGGAA AGGCGCCGCA TGGCTGAGGA ACTCAGGAAG
CTGAACGAGG AACTGGAGCT GCGTGTCATC GAGCGGACGG GGCGGTTGGA GGCCGCCATG
CGGGAGCAGG AGAGCTTCAG CTATTCGGTC TCGCACGACC TTCGGGGGCC GCTGCGCCAC
ATAAACAGCT ACACGGCTAT CATCGAGGAG GAGTTCGGCG CCGAGCTGCC GGCGGAGGCG
AAAAGGTACA TGGACCGCAT CCGGAATTCC AGCCGGATCA TGGGGGACCT GATCGACGAC
CTGCTGGAAC TCTCCCGGAT CGGCAGGTCC GAACTGAACA AGGTCCCCGT CAGCCTGAGC
GAGCTCGCCG GCGGCATCGG GCACCAACTG CTGGAAAGCG AGCCGGCGCG CCAGGCCGAG
CTGGTGATCG AGCCCGGCCT TAGGGTGCAT GGGGACCGGG TTCTTCTAAG GCAGCTTTTG
GAGAACCTGC TCGACAACGC CTGGAAATAT TCCAGGGGGA GGGGATGCGC CCGTATCGAG
GTGGGTAAGT CGGACTGGGG CGAGCGGGAC GCGTTCTTCG TCCGCGACAA CGGGGTGGGC
TTCGACATGA CCTACCAGGA CAAGCTGTTC GGGGCCTTCC AGCGCCTGCA CGGCTCGGAG
TTCGAGGGAA CCGGGATCGG CCTCGCCACC GTGAAGCGGA TCGTGGAGCG TCATGGCGGA
ACTGTCTGGG CGCAGGGGGA GGTCGATGCC GGGGCCACCA TCTACTTCAC CCTCTCCTGA
|
|---|
| Protein sequence | MEMPLFRLLC LVATAISFLV IIPTNYLHHR PAEINAAVFC FGLSALWLFR RACQGKHHLK
SFFFLLLLLL NLVWFPSGGT SGSSGYFFYC LFLYPPIFYR GKTRWLLLVL AVADAVMLLA
AEIVFPGSVV HYAAAYDRTA DLAVGLVMSA FCCSMMLWLL LEQHDREQRR LMSLNEELRM
AMDDRACVES SMLQNRELLH AVIEGTTDAV FVKNLQGQYL LFNRAAEAMT GVSAGQALGN
DDHAVFPPDV AQKAMAKDRY VLETREPQTN EVNLASPDGE TRIFEAIKGP LQDGKGNLVG
VFGISRDVTE RRRMAEELRK LNEELELRVI ERTGRLEAAM REQESFSYSV SHDLRGPLRH
INSYTAIIEE EFGAELPAEA KRYMDRIRNS SRIMGDLIDD LLELSRIGRS ELNKVPVSLS
ELAGGIGHQL LESEPARQAE LVIEPGLRVH GDRVLLRQLL ENLLDNAWKY SRGRGCARIE
VGKSDWGERD AFFVRDNGVG FDMTYQDKLF GAFQRLHGSE FEGTGIGLAT VKRIVERHGG
TVWAQGEVDA GATIYFTLS
|
|---|
| |