| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0885 |
|---|
| Symbol | |
|---|
| ID | 8136206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 1054597 |
|---|
| End bp | 1056639 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644868501 |
|---|
| Product | squalene-hopene cyclase |
|---|
| Protein accession | YP_003020710 |
|---|
| Protein GI | 253699521 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1657] Squalene cyclase |
|---|
| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0000000000419297 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCTCCC CTTTCAAGCA CCCCATATCA AACGCACTCA CCTCATTCAA CGGTAACTTT
GCAGAGCCGG AGCAATGCGT AGAGCAACAG ACAGGAGCAA AGGTGCATCA CCTTCCTGCT
TCAATCTGGA AGCGGAAAAT GGGCAAGGCA AAGAGCCCCT TGGATGTAGC CATTGAGGGA
AGCCGCGACT TCTTCTTTCA GGAGCAGCTA CCCAAAGGTT ATTGGTGGGC AGAACTCGAA
TCCAATGTCA CCATCACCGC CGAATACATC ATGCTGTTCC ATTTCCTTGG GCTGGTTGAT
CGTGAGCGCC AGCGCAAGAT GTCGAACTAC CTACTGTCGA AACAGACTGA AGAAGGTTTC
TGGCCCATCT ATTACGGCGG ACCGGGCGAT CTCTCCACCA CCATAGAGGC CTACTTCGCC
CTGAAGCTCT CCGGGTACCC GGCGGACCAC CCGGCCCTGG CGAAGGCGCG CGCCTTCATC
CTGGAGCAGG GGGGGGTCGT CAAGAGCCGC GTCTTCACCA AGATCTTCCT TGCGCTCTTC
GGCGAGTTCG AGTGGCAGGG GGTCCCGAGC ATGCCGGTGG AGCTGAACCT CCTTCCCGAC
TGGGCCTACA TCAACATTTA CGAATTCTCC AGTTGGGCCA GGGCGACCAT CGTCCCGCTT
TCCGTGGTGA TGCACAGCCG CCCGGTGCGC AGGGTCCCCC CTTCCGCGCG GGTGCAGGAA
CTCTTCGTGC GGCAGCCCAC CGCGGCGGAC TACAGCTTCG CCAAGAACGA CGGCATCTTC
ACCTGGGAGA ATTTTTTCCT AGGTCTTGAC CGCGTGCTCA AGGTGTACGA GAAGAGCCCG
CTGCGCCCGT TCAAGAACAT GGCGCTGGCC AAGGCGGAGG AGTGGGTGCT GGAGCACCAG
GAGCCGACCG GCGACTGGGG AGGGATCCAG CCGGCCATGC TGAACGCCGT CCTCGCGCTC
AACGTGCTGG GGTACCAGAA CGACCACCCC GCGGTGGAGC AGGGGTTGAG GGCGCTGGCG
AACTTCTGCA TCGAAACCGA GGACCAGTTG GTGCTGCAAT CCTGCGTGTC GCCTGTGTGG
GACACGGCGC TGGCGTTAAA GGCGCTGCTG GACGCGGGCG TTCCTCCCGA CCACCCCTCC
CTGGTGAAGG GGGCCCAGTG GCTTCTGGAC AAGGAGGTGA CCCGGCCAGG CGACTGGCGC
GTCAAGTCCC CAGCCCTTGA ACCGGGCGGA TGGGCCTTCG AGTTCCTGAA CGACTGGTAC
CCGGACGTGG ACGACTCCGG CTTCGTCATG ATCGCCCTGA AGGGGATCCA GGTGAAGGAC
CGCAAGTCCA TGGACGCCGC CATCAAGCGC GGCATCAACT GGTGCCTGGG GATGCAGAGC
AAGAACGGCG GCTGGGGGGC GTTCGACAAG GACAACACCA GGCACGTCCT GAACAAGATC
CCCTTTGCCG ACCTGGAGGC GCTCATCGAT CCGCCCACCG CGGACCTGAC CGGCCGTATG
CTGGAGCTGA TGGGAACCTT CAACTACCCC ATCACCTTGC CGGCCGCGCA GCGCGCCATC
GAATTCCTGA AGAAGAACCA GGAGCCGGAG GGGCCCTGGT GGGGGCGCTG GGGGGTGAAC
TACCTTTACG GCACCTGGTC CGTGCTTTGC GGGCTGGCCG CCATAGGCGA GGACATGGAT
CAGCCTTACA TCCGCAAGGC GGTGAACTGG ATCAAGTCGC GCCAGAACAT CGACGGAGGC
TGGGGCGAGA CCTGCCAGTC GTACCACGAC CGGACCCTGG CAGGCGTCGG CGAGAGCACC
CCTTCCCAGA CGGGGTGGGC GCTTTTAGGG CTCTTGGCGG CCGGCGAGAT GCACTCGGCG
ACCGTGGTGC GCGGGGTGCA GTACCTGATC TCCACCCAGA ACAGCGACGG GACCTGGGAC
GAACAGCAGT ACACCGGGAC CGGGTTCCCC AAGTACTTCA TGATCAAGTA CCACATCTAC
CGCAACTGCT TCCCGCTCAT GGCTCTGGGA ACCTACCGCA CCTTGACGAG GACGCAGCCG
TGA
|
|---|
| Protein sequence | MTSPFKHPIS NALTSFNGNF AEPEQCVEQQ TGAKVHHLPA SIWKRKMGKA KSPLDVAIEG
SRDFFFQEQL PKGYWWAELE SNVTITAEYI MLFHFLGLVD RERQRKMSNY LLSKQTEEGF
WPIYYGGPGD LSTTIEAYFA LKLSGYPADH PALAKARAFI LEQGGVVKSR VFTKIFLALF
GEFEWQGVPS MPVELNLLPD WAYINIYEFS SWARATIVPL SVVMHSRPVR RVPPSARVQE
LFVRQPTAAD YSFAKNDGIF TWENFFLGLD RVLKVYEKSP LRPFKNMALA KAEEWVLEHQ
EPTGDWGGIQ PAMLNAVLAL NVLGYQNDHP AVEQGLRALA NFCIETEDQL VLQSCVSPVW
DTALALKALL DAGVPPDHPS LVKGAQWLLD KEVTRPGDWR VKSPALEPGG WAFEFLNDWY
PDVDDSGFVM IALKGIQVKD RKSMDAAIKR GINWCLGMQS KNGGWGAFDK DNTRHVLNKI
PFADLEALID PPTADLTGRM LELMGTFNYP ITLPAAQRAI EFLKKNQEPE GPWWGRWGVN
YLYGTWSVLC GLAAIGEDMD QPYIRKAVNW IKSRQNIDGG WGETCQSYHD RTLAGVGEST
PSQTGWALLG LLAAGEMHSA TVVRGVQYLI STQNSDGTWD EQQYTGTGFP KYFMIKYHIY
RNCFPLMALG TYRTLTRTQP
|
|---|
| |