| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0884 |
|---|
| Symbol | |
|---|
| ID | 8136205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 1053594 |
|---|
| End bp | 1054583 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644868500 |
|---|
| Product | hopanoid-associated sugar epimerase |
|---|
| Protein accession | YP_003020709 |
|---|
| Protein GI | 253699520 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03466] hopanoid-associated sugar epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0000000000222195 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGCAT TCGTCACAGG CGCCACCGGG TTCATCGGCG CGAGCATCGT GCGCGAACTG
TTGAAGGACG GCTGGGAGGT ACGGGTCTTG GCCCGGCCCG GCTCGGACCG TCGCAACCTC
TCCGGGCTCG ACATAGAGAT CAGGGAAGGG GACCTGAGCG ACCGGGAGGC GCTGGTGCAG
GCGCTCAGCG GCTGCCGGGC GCTGTTCCAC GCCGCCGCCG ATTATCGGCT CTGGACACCC
ACGCCGGAGG CCATGTACGA TGTCAACGTC AAAGGGACCC GGGCGATACT GTCGGCGGCT
CTCGCGGCGG GCATCGAGAA GGTGGTCTAC ACAAGCAGCG TCGGGACCCT GGGGAACCCC
GGCGACGGCA CCCCCGGAGA CGAGAGCACA CCGGTGGACT TCCGCCACAT GGTGGGGGAC
TACAAGAAGA GCAAGTTCCT CGCCGAGCGG GCGGCGGAGT CGTTCCTGGC AAAGGGGTTG
CCGCTCGTGA TCGTGAACCC GTCGACCCCG GTGGGCCCGA TGGATGTGAA GCCTACGCCG
ACGGGAAAGA TCATCGTCGA CTTCCTGAAC GGCCGGATGC CCGCCTACCT GGACACGGGG
CTGAACCTGA TAGACGTGGA GGCTTGCGCG CGGGGGCATG TCCTGGCGGC GCGCAAGGGG
CGGGTCGGGG AAAAGTACAT CCTTGGGAAC CGCAACCTGA CCCTGGCCGA GATATTCGAG
ATGCTGTCCG GCATCACCGG GCTCAAGGCG CCGCGGGTGA AGCTCCCCTA CTATCCGATA
CTTATGGCCG CATACGTGAA CCATGCGCTG TCGGCCGTGA CAGGGAAAGA GCCGCTGATA
CCGCTTGCCG GCGTGCAGAT GGCGGCGAAG TTCATGTATT TCGATGCGGG GAAGGCGGTG
AGCGAGTTGG GGTTGCCGCT CTCCCCCGTG GAAGGCGCGC TGGATCGCGC CGTACAGTGG
TTCCGCAGCA ACGGCTACGT TAACCGATAA
|
|---|
| Protein sequence | MKAFVTGATG FIGASIVREL LKDGWEVRVL ARPGSDRRNL SGLDIEIREG DLSDREALVQ
ALSGCRALFH AAADYRLWTP TPEAMYDVNV KGTRAILSAA LAAGIEKVVY TSSVGTLGNP
GDGTPGDEST PVDFRHMVGD YKKSKFLAER AAESFLAKGL PLVIVNPSTP VGPMDVKPTP
TGKIIVDFLN GRMPAYLDTG LNLIDVEACA RGHVLAARKG RVGEKYILGN RNLTLAEIFE
MLSGITGLKA PRVKLPYYPI LMAAYVNHAL SAVTGKEPLI PLAGVQMAAK FMYFDAGKAV
SELGLPLSPV EGALDRAVQW FRSNGYVNR
|
|---|
| |