| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0741 |
|---|
| Symbol | |
|---|
| ID | 8136056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 883763 |
|---|
| End bp | 887344 |
|---|
| Gene Length | 3582 bp |
|---|
| Protein Length | 1193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644868358 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003020573 |
|---|
| Protein GI | 253699384 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.0000131287 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACCG ACGATGGCCA CCTCGCAAAC GGTCGCACCC GCAGCGCCCT CATCTTTTTG
GTCCTCACCG CCTTTGGCTT GGCGGGCAAT TATTTCAAGT TTCCCCTCTT CCTCAACATC
GACTTTCTCT TCGGCAGCAT CTTCGCGCTG TTCGCACTGC AGCTCCTGGG TCTCCGGCTC
GGCACTGCGG CAGCGGCGCT GATCGGATGC TATACCTACG TTCTCTGGAA CCACCCTTAC
GCAGCCATCA TTCTCGCTGC CGAGGCCGCA GCAGTAGGCG CTCTGATGGA GCGCCGCAAG
TACGGCATGA TCTCGGCAGA CATTGTGTAC TGGGTCTTCA TGGGCGTGCC GCTCGTTTAC
CTGTTTTACC ACGGCGCCAT GCACGTCCCG CTGAGCAACG TCCACATCAT CGCGTCGAAG
CAGGCGATGA ACGGTGTAGC GAACGCCATC GTGGCGAGGC TTCTCTTCAC CGTTTTTGCC
CTCAGGTCGC GTTCGGCGAT GATCCCGTTC CGGGAGATGA TTACGAGCCT GCTCGCCTTT
TTCGTTGTGG CGCCAGCTCT TTTGCTGTTG ACCCTTGAGG GGAGGGGCGA CTTTGCGGAA
ACCGATGAGA TCATCCGCGC CGGACTGAAG CGGGATATAG ACCGCGAGGC CTCACAGTTG
GCAACGTGGG TGACGAACAG GAAGGCGGTG ATCGAGAGTC TGGCGGACCT GGCGGAGTCC
AATTCCCCCG AAAAGATGCA ACCGTACCTG GAGCAGGCAA CAAAGTCGGA CACCAATTTC
TTGAGTGCCG GACTTCTTGA CCGAAGCGCC ACACTCAAAG CGTATTATTC CTTGCACGAC
GACCTGGGGG AGATGAACAC CGGCAAGACC TTCATCAACG ACCACTACAT CCCCAAACTG
AAGCAGACGC TAAAGCCGAT GCTGTCTGAA ACAGTCCAGG CCAAGGACAA TGGCCCCAAA
CTGCTGGTAT CGATGCTCGC TCCGGTGGTA GTCCGGGGAG AGTACCGCGG CTATGTCATA
GGGGTGCTCA GCCTGCAACA GATAAAGGAG CGACTGGAAA GGAGTAGCAG CTACAAGGGG
ACCCATTACA CCCTTTTGGA CCGGAAAGGC ACCGTCATCA TGAGCAATCG TTTCGACCAG
ACGACGATGA CACCTTTTCG GCGCGGCAAG GGAACCATCA AGAAACTGGA TAGCGGCATC
AGCCAGTTTG TGCCGGACGC TCCCCCCAAT ACGCCTATGT CGGAGCGTTG GAAAAAATCC
CGCTACAGCG CGGAATCGAC CATAGGAGAA CTGGCGGAGT GGCGACTGGT ACTGGAACAG
CCTGCGGCGC CTTTCCAAAA GCAGCTTTAC GACAGCTGTA CCAAGAAGCT GATCCTGATC
TCGCTGCTGA TGCTCATGGC GCTCGCCCTG GCATCCTTTT TGGGACGCCG GATCATGGTT
ACCATAGAGA ACCTGCGCAG GGTGACCAAC GACCTCCCCT CAAGGCTTGC CTCCGGCGGA
TTTGTCGATT GGCCGCAAAG CGGGATAACG GAGACCAACA ATCTGATCGA GAATTTCCAG
GTGATGAGCG AAACCATCGA AGAACACCTC ACCGAACTGC AACTGCTCAA CGACTCCCTG
GAGCAACGGG TACAGGAGCG GACGCAGCAG GTGGAACGAC TGGCAAGCGA GCAGCGAACC
ATATTGACCA CCATGCCGAT AGGTGCATGC CTTTTGGTGG ACCGGAAGAT ACGCATGGCC
AACCAGGCCT TCGACAAGAT TACCGGGTAC GAACCGGGTA AGACTCTGGG GATGGATACG
GCTCAATTGC ACCCGGACCT GCAGTCGTAT CAGCAGTTTT GGGACGCCGC AAGCAGTGCG
ACAGCCAAGG GCGGGATTCA TAGCGCCGAC ATGGAGCTGA GAAGAAAGGA CGGCTCCTTG
ATCTGGTGCA ACCTCGTGGG GCAGATGGTG AACCCGACTG CACCTGAGGA GGGCTTCATC
TGGATGGTCC AGGACATCTC CGAGCGCAAG ACCATGGAAT CTCAACTGCG CGCGAGCGAA
ACCCACTACC GCCTGCTTAC CGAGGACGTC GCCGATGTGG TGTGGAAGTT GGACGCCGGT
TACCGCTTCA CCTACATCAG TCCCGCCGAC GAGCGCCTGC GAGGCTATCG GGCGGACGAG
GTCTTAGGGC ACACCATACT GGAGCAGACG ACGAGCGAGT GGCATGCCGC CATTACGGAA
AAAATGCGCC CCGGCGAGGA TGCCCGGGAG ACCTCCCCCT TGGAAATACA GCAGCGCTGC
AAAGACGGGC AACTTATCTG GACCGAGATC TTCTTCACCG CCGACCATGA CGCCGACGGA
GCCATCACCG GCTACCACGG CATAACGAGG GATATCACCC AGAGAAAGCA GGCCGTGGAG
CTGGAGCAGC AGTTGCTGCA TGCGCAAAAG CTCGAAAGCC TCGGCGTTCT CGCCGGGGGG
CTCGCCCATG ACTTCAACAA CATCCTGATG GCGATCATCG GCAACGCCGA TCTCGCCCAG
ATCCACCTCG GCACGGGTTC GCCGGCGGCG GAGAACCTGC AGAGGATCCA GAACGCCGCG
TCGCGCGCCG CGGACCTGAC CAGCCAGATG CTCGCCTATT CAGGCAAGGG AAGGTTCGTG
GTGGAGCGGA TAGACCTGAA CAGCCTGCTG GACGACATGC TGCACCTGCT TGAGGTCTCC
ATCTCGAAGA AAGCGGCCTT GAAGTTCAAC CTGCACCGGC CGCTCCCGCA CATCGTTGCC
GACGCGACCC AGATTCGGCA AGTGGTGATG AACCTGGTGA TCAACGCCTC GGAAGCAATC
GGGGACAACA GCGGGGAAAT AACGATCTCC ACAGGATGTT CGCAGTGCGT TGAGGAGTGC
CGGAGAGGGA GAAAGGTCAG CCGCGACCAG GGCGAGAGAC CATGCGTCTA TCTTGTCATC
GCAGACACCG GCTGCGGCAT GGGCAGTGAA ACGGTGGCAA AGATTTTCGA CCCGTTCTTC
ACCACTAAAT TCACCGGCCG CGGCTTAGGC ATGGCCGCGG TCCAGGGGAT CGTGAAAGGG
CATAAAGGCA CCGTAAAGAT CTCCAGCGAG CCAGGCAGAG GGACGACGTT CACGATCTGT
TTCCCCGTCG CCGAAGCGAC GGGCGAGGCA CCGGCGGAAA ACCGCAATGA AACCGGCGTC
GAAGTTTGGC AGGGGAGCGG CACGGTTCTT CTGGTGGAGG ACGAGGATAC GGTGCGGGAG
ATAGGGGTGC AAATGCTGGA AAGCCTTGGT CTCAAGGCGC TCACCGCTAA AGACGGCGAA
GAGGCCGTCG AGGTCTTCAG GAGGGGGGAG GAGGTTTCCT TCGTGATCCT CGACCTGACC
ATGCCGCGGA TGGACGGCAA GCAATGCCTG AGAGAGCTGC GCCGGTTGGA TCCGGCGGTC
AAGGTGATCA TGTCCAGCGG CTTCAACGAA CAGGAGATCG CCCGCGACCT CGATGGGGGG
CCGTGCGGTT TCATCCAAAA GCCGTACGAC CTGCCCGAAC TGCAACAGGC GATCGGGAAA
TATATAGGAA AACCGGAACC GTTTGCCACG GAGAACTTCT GA
|
|---|
| Protein sequence | MFTDDGHLAN GRTRSALIFL VLTAFGLAGN YFKFPLFLNI DFLFGSIFAL FALQLLGLRL
GTAAAALIGC YTYVLWNHPY AAIILAAEAA AVGALMERRK YGMISADIVY WVFMGVPLVY
LFYHGAMHVP LSNVHIIASK QAMNGVANAI VARLLFTVFA LRSRSAMIPF REMITSLLAF
FVVAPALLLL TLEGRGDFAE TDEIIRAGLK RDIDREASQL ATWVTNRKAV IESLADLAES
NSPEKMQPYL EQATKSDTNF LSAGLLDRSA TLKAYYSLHD DLGEMNTGKT FINDHYIPKL
KQTLKPMLSE TVQAKDNGPK LLVSMLAPVV VRGEYRGYVI GVLSLQQIKE RLERSSSYKG
THYTLLDRKG TVIMSNRFDQ TTMTPFRRGK GTIKKLDSGI SQFVPDAPPN TPMSERWKKS
RYSAESTIGE LAEWRLVLEQ PAAPFQKQLY DSCTKKLILI SLLMLMALAL ASFLGRRIMV
TIENLRRVTN DLPSRLASGG FVDWPQSGIT ETNNLIENFQ VMSETIEEHL TELQLLNDSL
EQRVQERTQQ VERLASEQRT ILTTMPIGAC LLVDRKIRMA NQAFDKITGY EPGKTLGMDT
AQLHPDLQSY QQFWDAASSA TAKGGIHSAD MELRRKDGSL IWCNLVGQMV NPTAPEEGFI
WMVQDISERK TMESQLRASE THYRLLTEDV ADVVWKLDAG YRFTYISPAD ERLRGYRADE
VLGHTILEQT TSEWHAAITE KMRPGEDARE TSPLEIQQRC KDGQLIWTEI FFTADHDADG
AITGYHGITR DITQRKQAVE LEQQLLHAQK LESLGVLAGG LAHDFNNILM AIIGNADLAQ
IHLGTGSPAA ENLQRIQNAA SRAADLTSQM LAYSGKGRFV VERIDLNSLL DDMLHLLEVS
ISKKAALKFN LHRPLPHIVA DATQIRQVVM NLVINASEAI GDNSGEITIS TGCSQCVEEC
RRGRKVSRDQ GERPCVYLVI ADTGCGMGSE TVAKIFDPFF TTKFTGRGLG MAAVQGIVKG
HKGTVKISSE PGRGTTFTIC FPVAEATGEA PAENRNETGV EVWQGSGTVL LVEDEDTVRE
IGVQMLESLG LKALTAKDGE EAVEVFRRGE EVSFVILDLT MPRMDGKQCL RELRRLDPAV
KVIMSSGFNE QEIARDLDGG PCGFIQKPYD LPELQQAIGK YIGKPEPFAT ENF
|
|---|
| |