| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0550 |
|---|
| Symbol | |
|---|
| ID | 8135861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 673306 |
|---|
| End bp | 674928 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644868163 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003020382 |
|---|
| Protein GI | 253699193 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 0.0519596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACCG ACGACACCAT CGCCATCCCC CAGCTCCTTT ACGAGGCGGT CAGCCGCGGC
AAGCGCGAGT GGGAACAGAC CTTCGACTCC ATCGGCGACC TGATCTTCAT CACCGATACC
AACCACACCA TTTCGCGGGC CAACCGCGCC ATGGCCAGGC ATTGCGGCCT GCGTCCGGAG
GAGCTCCCGG GACGAAAGTG CTACGACCTC TTCCACGACC TGGCGTCTCC CCCCCCTTAC
TGCCCGCTCC GGAGCCTGAA AGAGGGGGGG GCGCCACAGG CGGAGGAAGT CGAGGTCGCC
AAGTTCCGCG GCTTCTTCGA CATCTCGGTA TCACCTTTGT ACAACGATGA GGGAACACTC
GCCGCCTGCG TCCACGTCGC CCGCGACGTC ACCGAGCGCA AGAGGGCCCA GGAGTACCGG
CTGGAGTTGG AGCAGCAACT GCTGCAGTCC CAAAAGCTCG AGAGCCTTGG TGTTCTCACC
GGCGGCATCG CCCACGACTT CAACAACATC CTGATGATAA TCCTCGGGCA CTGCATGCTC
GCCAAGGAGA ACCAGGCCGT CGCCCCGGTC GTCGGCCACC TGGATCAGAT CGAGTCCGCC
GGAAACCGTG CCGCCGACCT TTGCCGCCAG ATGCTGGCCT ACGCCGGCAA GACGCCGCTG
GTCCAAACTC AGATCCACCT CCCCGCGCTG GTGCGCGACA TGGTGCATAT GCTTCAACCC
GCGTTCAACA AGAAAGTGAT CATTGAATGC GACCTCGACG GGGACCTGCC CAACCTGACC
TGCGACGAGG GGAAGATCCA GCAGATCGTG ATGAACCTGG TGGTGAACGC AGCCGAATCG
CTTGGAGAGC GGGGGGGGAA CGTCAAGGTG ACCCTCCGGC ACAAGACGGT GCTGCAGTCG
GAGCAGGAGG TCGACTGCTT CGGCAACTCC ATACCCCCTG GAACCTATCT ATGCCTGGAG
GTCGCCGACA CCGGATGCGG CATGGACCAG GAGACCCGGA AGCGGATCTT CGAGCCGTTT
TTCACCACCA AGTTCACCGG ACGGGGACTT GGGCTTTCCG CGATCAGCGG CATCATCAAG
TCCCATGAAG GCGCGCTGCA GCTCTGCAGC GCCCCCGGCG CGGGGACCAC TTTCAGCGTC
TATTTCCCCC TCCCCCCATG CTGCCCCGCC GGCGACCAAG TCGCGCCGCC CCTCCCCTCG
CCCTCCAAAG CGGCCGCAAG GCTCGAAGGC ACCATCCTGC TGGTAGACGA CGAGGAGGAA
CTTCGTGCCG TCGGCTGTGA ACTTCTCACC AGCATGGGGT TCAAGGTGAT TGCCGCCAGT
AACGGCAGCG AGGCACTCGC GATCTGGCAG GAGCGCAAAA GCGAGATAGA CCTCGTGCTG
ATGGACCTGA CCATGCCGGA ACTGGACGGC GTCGAGACCT ACCGCGCCCT GCGCGAGGAT
ACTTCCACGC TCCCGGTTCT TTTTTGCAGC GGGTACGGAG ACCAGGACAT CCGCCCTTGC
ATAGGCGAGG ACGTCCACGC CGGCTTCATC TCCAAACCGT ACCAGTTGAA CCACCTACAA
CGAGCACTGG CGGCCCTCTG GGAAAACCGC ATGCCTCATG CCGCAGAGGG TTTCCCCGCC
TGA
|
|---|
| Protein sequence | MVTDDTIAIP QLLYEAVSRG KREWEQTFDS IGDLIFITDT NHTISRANRA MARHCGLRPE
ELPGRKCYDL FHDLASPPPY CPLRSLKEGG APQAEEVEVA KFRGFFDISV SPLYNDEGTL
AACVHVARDV TERKRAQEYR LELEQQLLQS QKLESLGVLT GGIAHDFNNI LMIILGHCML
AKENQAVAPV VGHLDQIESA GNRAADLCRQ MLAYAGKTPL VQTQIHLPAL VRDMVHMLQP
AFNKKVIIEC DLDGDLPNLT CDEGKIQQIV MNLVVNAAES LGERGGNVKV TLRHKTVLQS
EQEVDCFGNS IPPGTYLCLE VADTGCGMDQ ETRKRIFEPF FTTKFTGRGL GLSAISGIIK
SHEGALQLCS APGAGTTFSV YFPLPPCCPA GDQVAPPLPS PSKAAARLEG TILLVDDEEE
LRAVGCELLT SMGFKVIAAS NGSEALAIWQ ERKSEIDLVL MDLTMPELDG VETYRALRED
TSTLPVLFCS GYGDQDIRPC IGEDVHAGFI SKPYQLNHLQ RALAALWENR MPHAAEGFPA
|
|---|
| |