| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0466 |
|---|
| Symbol | |
|---|
| ID | 8135775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 572698 |
|---|
| End bp | 575040 |
|---|
| Gene Length | 2343 bp |
|---|
| Protein Length | 780 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644868084 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003020304 |
|---|
| Protein GI | 253699115 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.00551586 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCTTTG CCGAGCGGAT GAAAATCAGC TCCATCCTTT TCTTCAGCCT GCTCGTGTTC
GGGGCGGTCC TTTTGTTCTG GTCCTCGCGG GAGTTGAACT CGGCCCGGCA AAACGACGTG
CTGTCGGACG ACATCCAGAC CATCGTTTTC GAGCGCGCCA CGCTGCGTGA CGAGTATTTT
CTCTACGGGC TGGAGCGCGC CAGGGTGCAG TGGTTCGCCC TGAACCGCGA CGCGGAGGAG
TCGATCCGGC GCGGAACACT GCATTTGCGT GCCGGGGAGG AGCGCCAGGC CCTGGAGAAG
GTACAGGCGG ACCTCAGGGA GTCGGTACTG GTTTCTCAGC GGCTGGTCGA GCTTTTGCGG
GGGAAATCGG GCACGGAGCT GGAGAGGGCG CACCACGACG ATCTGGCCAG CCGGCTCTAC
AGCCAGATCA TGCTGAAGGA TTCCGCCCTG CAGCAATCGT CGGCAGCCCT GCAGCAGTTG
ACCCGCCGGC GCTTCGACAG GGCGAACTTT CGCACCGTCT TCCTCACCTT CGTCTTCGTG
CTGTCGGTGG TCGCGGGGGG GAGGGCCAAT GCCTTTTTCA TCAATTCCCT TTTGCGCCGC
AGGCTGCAGC TCTTAAACGA AGGGGTGGCG CGGATCGCAT CGGGTGATTT CAGCCACAGG
ATGGAGTGCC GGGGAAGCGA CGAACTGGCC CATCTCGCGG GGGTTTTCAA CGGCGTCCTC
GACAGGGTCC AGGACTACAC CGGGCAGCTG GAAAAAAGCC ACGACCTGTT GAACGGCCTC
TCCAGCCAGG TTCCAGGCAT ACTGTTCCAG GCCTGCCTCA CCCCGGCGGG CCTCTTCAGC
ACCCCCTACG TGAGCAGGCA CGTGGACGAG CTCTTCTTGG GCGATGCCGT GGTTCCCCCC
CAGGCGCCCG CCCAGCTCTT CGAGAGGTTC CACGCCGAGG AGTACCAGGC GATACTGGGG
ACCTTTCAGC ATTCGGCCGA GACGCTTGAG CCCTGGGAGT ACGCGTTCCG GATCAACGTC
CCGGACGGGG GCATCCGGTG GCTGCGCGGG CAGGCGCGAC CGATGCGGCT TTCCGACGGC
GGCACCCTCT GGCACGGGTT CATCTCGGAC ATCACCGAGA GCAAACGGGC CGAGGAGGCG
CAGCATCGAA GCGAGAGCCG CTATCGGCTG CAACTGCAGG AGTTGACCAA CATCTACACC
CACACAGCGG TCGGCCTCTT AGCCGTGGAC CGCGAGATGC GCTACCTGCG CCTCAACGAG
CAGATGGCCT GCTACAACTG CAGGCCCATG GACGAGCATA TCGGCAAGAC CATAGACGAG
GTGCATCCCC CCCGTTTCGT GGCCGTGCTC AAAGAGATGT GGCGCCCGGT CCTTGAGCGG
GGAGAGTCCC TGCTGAACCT GGAGGTTCAG GGGCAAGCGG ATTGGCCCAG CGGCCTGCGC
CATTGGCTGG TGAGCTTCCA GCCCCTGTTC GCCGAGACCG GCGCGGTCAT CGGCCTCACC
GGGTCGGTGA TGGACATAAC CGAGCGCAAG GTGGCCGAGC AGGTGCTTTT GGGGGCGAGG
CAGCAACTGG AGCGGGAGGT GCGGCTAAGG ACGGCAAAGC TCTCCCTGGT TAACCAGCAT
CTCCTCCGGG AGATTGAGGT GCGCAAGAAG ATCGAGGTCG AGCTCCTGGC CCAGCAGCAG
AAGCTGCAGG AGATGGCATT CGAGATCTCG ATGGCGGAGG AGCGGGAGCG CGACCGCATC
GCGAGCGAAC TGCACGACCA GGTGGGGCAG CGCCTGATCC TCGCCAAGAT CAAGCTGGAT
TCCCTGGCGA GCAACCTTCC CCTGGGGGAG TGCGAGGCGG AGGCAGTGGG GGTCGAGACC
CTGATCGAGC AGACCCTTCA GGACATCCGG TCACTCACCT TTCAGATCCG TCCACCTCTT
TTGGCCACCG CCGGTCTGGA AGCCGCGCTG CGCTGGCTGG GGGAGGAACT GCACGCCGAC
TTCGGGCTGG AGGTGGAGTT CAGCGTCGAC GGCAAGGACA AACCGCTCCG CTACGAGGTG
CGCTCCACCG TGTTCCAGGC GGTCCGCGAG TTGCTGCTCA ACGTGGCCAA GCACGCCGGG
ACCAAAAAAT GCCGGGTGCG CTACACCCGG GTCGGGGACC GCATCGTGAT GGAGGTGGAG
GATGACGGGG CAGGCCTCAA AACAGGCGCC GGCGACGGCT CCCGGGCCAG AAGCGGGGGG
TTCGGACTGT TGAACGTCAG GCAGAAGATA GGCCATCTGG GCGGGGTGTT CAGCATCGAG
TCCAGGCCGC AGGGAGGCAC CAGGGCTGCC ATCGAGGTTC CCGTGGAAAC CGAGACAAAA
TAG
|
|---|
| Protein sequence | MTFAERMKIS SILFFSLLVF GAVLLFWSSR ELNSARQNDV LSDDIQTIVF ERATLRDEYF
LYGLERARVQ WFALNRDAEE SIRRGTLHLR AGEERQALEK VQADLRESVL VSQRLVELLR
GKSGTELERA HHDDLASRLY SQIMLKDSAL QQSSAALQQL TRRRFDRANF RTVFLTFVFV
LSVVAGGRAN AFFINSLLRR RLQLLNEGVA RIASGDFSHR MECRGSDELA HLAGVFNGVL
DRVQDYTGQL EKSHDLLNGL SSQVPGILFQ ACLTPAGLFS TPYVSRHVDE LFLGDAVVPP
QAPAQLFERF HAEEYQAILG TFQHSAETLE PWEYAFRINV PDGGIRWLRG QARPMRLSDG
GTLWHGFISD ITESKRAEEA QHRSESRYRL QLQELTNIYT HTAVGLLAVD REMRYLRLNE
QMACYNCRPM DEHIGKTIDE VHPPRFVAVL KEMWRPVLER GESLLNLEVQ GQADWPSGLR
HWLVSFQPLF AETGAVIGLT GSVMDITERK VAEQVLLGAR QQLEREVRLR TAKLSLVNQH
LLREIEVRKK IEVELLAQQQ KLQEMAFEIS MAEERERDRI ASELHDQVGQ RLILAKIKLD
SLASNLPLGE CEAEAVGVET LIEQTLQDIR SLTFQIRPPL LATAGLEAAL RWLGEELHAD
FGLEVEFSVD GKDKPLRYEV RSTVFQAVRE LLLNVAKHAG TKKCRVRYTR VGDRIVMEVE
DDGAGLKTGA GDGSRARSGG FGLLNVRQKI GHLGGVFSIE SRPQGGTRAA IEVPVETETK
|
|---|
| |