| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0197 |
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| Symbol | |
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| ID | 8135502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | + |
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| Start bp | 235066 |
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| End bp | 238539 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644867817 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003020040 |
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| Protein GI | 253698851 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 2.5656599999999998e-21 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCATAC CCGTACCCGA ATACCTGAAG AGCATTAAGG AAAAACTCGC CCCCGAAAAG
AGCCGGCTCA GCGTCGCCGG GGTGGACGGC TCCGCCCCGG CCTACCTGTT GTCGCGGCTC
ATGACCGAGT CCGGCCCACC GCTCGTGGTT ATCACCGCCG ACCAGGAGAG CGCGGACGAG
CTTGCCCGCG AGCTGCGCTT TTTCAGCTGC AGCCACGGTG CGGTGCTACC CTTCCCCGGC
TGGGACGTCA CCCCCTTCGA GGCAGCCAGT CCCCACCCGG ACCTCGTGGG GGAGCGGCTG
AACGCCCTAG TGCGCCTTCT GGACGGCGGC GCCCGGGCCG TGGTGGTGCC GCTTGCCGCC
GCGCTGCAGC GGGTGATTCC GCGCGAGACC TTGGGGGGCG TCTGCCAGTA CCTTGTGGCC
GGCGAGGAAC TGGAGCGCGA GACCCTGGTC GAGAAGCTGG TGAAGCTCGG CTACTCCCAT
GTCCCCATCG TCGAGGACCG GGGGAGCTTC TCGGTGCGGG GGGGGATCCT GGACATCTTC
CCCCCCGACC AGGAGAGGCC GGTGCGCATC GAGTTCTTCG GCGACCTGGT CGAGACCATG
CGCCTCTTCG ACCCGGTCAC CCAGCGCTCG CTGGAGCCGC TTGCCGAACT GGTGCTGCTC
CCCTCGCGCG AGGTGATCCT GTCGGAGGGG GTGGTCAAGG AGTTCACGCC GAGACTGAAG
CGGCGCTGCG ACCACCTGGG GATCGGGGCC GACCGGCGCC GCGAGCTTTT GGAACAGCTG
CAGCAAGCGA TCTACCCCCC GGGGGTGGAC TTCCTGCAGC CGCTCTTCCA CCCGGGGCTG
GAGACGCTCT TCGACTACGC AGGCCCCGGC GCCACCCGCG TCCTCGTCGA CCCGGCCGCC
ATCGCGGAGG CGGGCGAGCG CTTCGAGGCG GATCTCGCCA AGGCGGCGGC CCGCGCCGAG
TTGCGCGACG CCATCACCTG CGACCCCGAC GACCTCTACC TCACCGCCGC GGAGCTGGAC
AGCATGCTGA GCGACGGGCG CCGCCTGGAA TTCCCCCGCC TGGAGTTGGC CGGGGAAGGG
GGGGAAACCC TCCGCCTCAG ATGTTCCACC AATAGCGACC TGAAGCTCGG GGTGAGCCCT
GAGGGCGAGC GGGTCCTGGC CCCCCTGACC GAGAAGATGG TGACCTGGAT CGCGGCGGGA
AACCGCGTGC TCATCCCGTG CCATCAGGCG GGGCAGGCCC GAAGGCTCTA CGAGCTCCTT
TCGCACTACC GGCTTCCGCT CGACTCCACC CAGGACTGCT TCGCGGACGC GGCGAGACGC
CCCCCGGGCC GGGTCGAGAT CCTGACCGGA GAGATCTCCC GCGGCTTCAG GCTTGAGGAA
GAGCGCCTGG TCGTGGTCGC CGAGGAGGAG ATCTTCGGCA AGAGGGTGAA GCGGCGCGGG
CTCTCCGAGG CGAAGAAGCA GCAGCTTCTC ACCTCGCTCG CCGAGTTGAA GCCGGGCGAC
CACATGGTGC ACGTCGACTT CGGCGTCGCC ATCTACCGCG GACTCCAGCA CCTGAGCCTC
ACCGGGTTGG AGGGGGACTT CCTGCTCCTG GAGTACGCCG GCGGCGACAA GCTCTACCTC
CCGGTGGACC GCATCAACCT GGTGCAGCGC TACGTGGGGG CCGAGGGGAT CGAGCCGAGG
CTCGACCGTC TCGGCGCGGC GGGTTGGGAA AAGGCCAAGG CGAAGGCGAG AGCCGAGGTG
CAGGAGATGG CGGCCGAACT CCTGAAGATC CACGCCGCGC GCGAGGTGCA GCAGGGATTC
AAGTTCTCCC CCGCCGACGA CATGTACCGC GCTTTCGAGG CGTCCTTCGC CTTCGAGGAG
ACCCCGGACC AGGCCGCGGC CATAGACCAG GTGATCGCGG ACATGGAAAG CCCGCGCCCC
ATGGACCGGC TGGTCTGCGG CGACGTCGGC TACGGCAAGA CCGAGGTAGC CATGCGCGCC
GCCTTCAAGT CGACCCTGGA CGGTAAGCAA GTGGCGATCC TGGTCCCCAC CACCGTCCTC
GCCCAGCAGC ACGCCGAGAG TTTCGCCTCG CGGCTCAAGG ATTACCCGGT CCGGGTGGAG
ATGCTCTCGC GCTTCAGGAC CCCCCAGCAG CAAAAGCAGA TCCTGGAAGG GGTGAAGAAA
GGGGAGGTCG ACATCGTCAT CGGCACCCAC AGGCTTTTGC AAAAGGACGT GGTCTTCAAG
GACCTGGGAC TTTTGATCGT CGACGAGGAG CAGCGCTTCG GCGTGGCCCA CAAGGAAAGG
CTCAAGCAGT TCCGCGCCGT GGTTGACATC CTCACCCTCA CCGCGACCCC GATTCCGCGC
ACCCTCTACA TGTCGCTCAT GGGGATACGC GACCTCTCCA TCATCGACAC GCCGCCGGTG
GACCGGCTCG CCATCAAGAC CTTCGTCTCC CGCTCCTCGG ACGAGCTGAT CCGGGAGGCG
GTACTGAGGG AGCTTAGGCG CGGCGGGCAG GTATTCTTCG TCCACAACCG GGTGCAGACC
ATAGGAGCCA TGGCCGAGGA ACTCAAGCGC ATCGTCCCCG AGGCGAAGAT CGCGGTGGGG
CACGGCCAGA TGGCCGAGAA GGAGCTGGAG CAGGTGATGC TCTCCTTCAT GCATGGCGAG
ACCAACCTCC TTCTTTGCAC CACCATCATC GAAAGCGGCC TCGACATCCC GACCGCCAAC
ACGCTGATCG TGAACCGGGC CGACACCTTC GGGCTGTCGC AGCTCTACCA GTTGCGCGGC
AGGGTGGGAC GCTCGAAAAG CCGCGCCTAC GCCTATCTCC TCATCCCGGG CGAGGGGGCC
ATCTCGCCGG AGGCCCGGGA GCGGCTGAAG ATCCTGCAGG AGTTGACCGA GCTGGGGGCG
GGGTTCAGGA TCGCCACCCA CGACCTGGAG CTCAGGGGCG CCGGCGACCT TCTGGGGGCG
CGGCAAAGCG GGGACATCGC GGCGGTGGGA TTCGAACTCT ACACAGAACT TCTGGACGAG
GCGGTGCGCA CCCTTAAGGG TGAGGCCCTG CCGGAGCGGG TCGAGCCCGA GATCAAGCTC
AAGGTTCCCG CCTTCATCCC GGAGGATTAC GTACGGGACC CGAACCAGCG CCTGATGATC
TACAAGAAAC TGACCCAGCC GACCGACGAG GCGGAGATAG ACGATATCCG GGCGGAACTC
GCCGACCGCT TCGGGCAACT GCCGGTGGCG GCGGTCTACC TGTTGGAGGT GATGCGCCTG
CGGGTGACGC TGAAGCGGCT CCTGGTGAAG GAGATCGAGC TGGCCGGCAA CGAGCTGGTC
CTCTCCTTCC ACGAGCGGAC CCCCGTCTCC CCCGACGCCA TCATGGCTTT GCTCAGGAAG
GAGAAGGGGA AATACCGCTT CACGCCGGAC TTCCGCCTCT ACGCCCGCCT GGCAGACGGC
TCCTTCGACG GGGTCCTGGC CGAGTCTAGA AATCTCTTGA AATGCCTAGG CTGA
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| Protein sequence | MTIPVPEYLK SIKEKLAPEK SRLSVAGVDG SAPAYLLSRL MTESGPPLVV ITADQESADE
LARELRFFSC SHGAVLPFPG WDVTPFEAAS PHPDLVGERL NALVRLLDGG ARAVVVPLAA
ALQRVIPRET LGGVCQYLVA GEELERETLV EKLVKLGYSH VPIVEDRGSF SVRGGILDIF
PPDQERPVRI EFFGDLVETM RLFDPVTQRS LEPLAELVLL PSREVILSEG VVKEFTPRLK
RRCDHLGIGA DRRRELLEQL QQAIYPPGVD FLQPLFHPGL ETLFDYAGPG ATRVLVDPAA
IAEAGERFEA DLAKAAARAE LRDAITCDPD DLYLTAAELD SMLSDGRRLE FPRLELAGEG
GETLRLRCST NSDLKLGVSP EGERVLAPLT EKMVTWIAAG NRVLIPCHQA GQARRLYELL
SHYRLPLDST QDCFADAARR PPGRVEILTG EISRGFRLEE ERLVVVAEEE IFGKRVKRRG
LSEAKKQQLL TSLAELKPGD HMVHVDFGVA IYRGLQHLSL TGLEGDFLLL EYAGGDKLYL
PVDRINLVQR YVGAEGIEPR LDRLGAAGWE KAKAKARAEV QEMAAELLKI HAAREVQQGF
KFSPADDMYR AFEASFAFEE TPDQAAAIDQ VIADMESPRP MDRLVCGDVG YGKTEVAMRA
AFKSTLDGKQ VAILVPTTVL AQQHAESFAS RLKDYPVRVE MLSRFRTPQQ QKQILEGVKK
GEVDIVIGTH RLLQKDVVFK DLGLLIVDEE QRFGVAHKER LKQFRAVVDI LTLTATPIPR
TLYMSLMGIR DLSIIDTPPV DRLAIKTFVS RSSDELIREA VLRELRRGGQ VFFVHNRVQT
IGAMAEELKR IVPEAKIAVG HGQMAEKELE QVMLSFMHGE TNLLLCTTII ESGLDIPTAN
TLIVNRADTF GLSQLYQLRG RVGRSKSRAY AYLLIPGEGA ISPEARERLK ILQELTELGA
GFRIATHDLE LRGAGDLLGA RQSGDIAAVG FELYTELLDE AVRTLKGEAL PERVEPEIKL
KVPAFIPEDY VRDPNQRLMI YKKLTQPTDE AEIDDIRAEL ADRFGQLPVA AVYLLEVMRL
RVTLKRLLVK EIELAGNELV LSFHERTPVS PDAIMALLRK EKGKYRFTPD FRLYARLADG
SFDGVLAESR NLLKCLG
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