Gene GM21_0116 details

Gene Information

• Locus tag: GM21_0116
• ID: 8135419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: +
• Start bp: 144283
• End bp: 146265
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644867736
• Product: alpha amylase catalytic region
• Protein accession: YP_003019960
• Protein GI: 253698771
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 63
• Fosmid unclonability p-value: 0.0759289
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAAGGCA GAGCGCGGAT AGCGATAGAG GGAGTTCACC CGCAGATCGA CTGCGGCCGG 
TTCGCGGTGC AGCGGGTAAC GGGCGATGAG ATGGCGGTGC AGGCGGACAT CTTCAGCGAC 
GGCCACGACG AGGTGGTGGC GGTGCTGCTC TACCGCAGGC AGGGGGATGA AGTCTGGCAG 
GAATCCCAGA TGCAGCGGCT GGAGAACGAC CGCTGGCAGG GGAGCTTCAA GCTGGGGGAA 
CCCGGGTTCT ACGAGTACAG CCTGCTCGGC TGGGTGGACC ATTTCCGCAC TTGGCAGCGC 
GACCTGCAGA AAAGGTTCGA GGCGGGGCAG GACGTCTCCG TGGACCTGAA GATCGGCAGC 
AGCATCCTGT CGCAGGCGGC CAAGGAGGCG AAGGAGCCGG CGGCCGCGAA GCTGCGCCAG 
GCGGTGGAAG CGCTGAACCA GGAACCGGAA CTGGAAGGGG CGGTGGCGCT AGGGCTCGAC 
GCCCGGCTTG CCGACCTGGT CAGCAACTGC TGCGCCCGCG GCCTCGCCAC CCGCTATCAT 
AAGGATCTCG TGGTCCGGGT GGACCGGAAG AAGGCGCTCT TCAGCAGCTG GTACGAACTT 
TTCCCGCGCT CGCTGGGGGG GGGCGAAGGG AGGCACGGCA CGCTCAAGGA GTGCGTCGAG 
ATCCTTCCGG ACATAGCGGA GCTTGGCTTC GACGTGCTCT ATCTACCCCC CATCCACCCC 
ATCGGCACCA GCAAGAGAAA GGGGAAGGCG AACCGTGTCG AGGCGGAGCC CGGGGACCCC 
GGGAGCCCTT GGGCCATCGG CTCGCCTGAG GGGGGGCACA AGTCGATACA TCCCGAACTG 
GGGACCCTGG AGGATTTCGA TGCCCTGGTC GGCGAGGCGC AGCGGCACGG CATCGAGATC 
GCCCTCGACA TCGCCTTCCA GTGCTCGCCG GACCACCCGT ACCTGAAGGA GCATCCTGAG 
TGGTTTCTCT GGAGGCCGGA CGGCACGGTC CAGTACGCGG AGAATCCTCC CAAGAAGTAC 
CAGGACATCG TCCCGTTCAA CTTCGAGACG CCGCATTGGC AGGAGCTCTG GGAGGAGCTG 
AAGAGCATCT TCTTCTTCTG GATGGACCGG GGGGTGCGCA TCTTCCGGGT GGACAACCCG 
CACACGAAGC CCTTCCCCAT GTGGGAATGG ATCATCGCGC AGGCGAGGGA GAAAGATCCC 
GACGTCATCT TCCTCGCCGA GGCGTTCACC AGGCAAAAGA TCATGTACCG GCTGGCGAAG 
CTCGGCTTCT CGCAGTCCTA CAGCTATTTC GCCTGGCGCA ACAGCAAGCG GGAGCTGACC 
GAGTACCTGA CGGAGTTGAC CCGAAGCGAC GCGAAGGAGT TCATGCGCCC CAACTTCTGG 
CCCAACACCC CGGACATCCT GACCGAGTAC CTGCAGTACG GAGGCCGCGC CGCTTTCATG 
ATCCGGGTGA CCCTGGCGGC GACTCTCTCC TCGAACTTCG GCATCTACGG CCCGGCGTTC 
GAGCTCTGCA TCCCGACGGC CGAGGCCGCC GGATCGGAGG AATACAAGGA TGCAGAGAAG 
TACGAGATCC GCCCTTGGGA CCGGAAAGCC CCGGGGAACA TCAGGGAGCT GATCGCCAAG 
CTGAACCGGA TCCGGCGCGA GCATTCGGCA TTGCAGGAGA CCTGCAACGT GCAGTTCCTG 
GAGTCCGACA GCGACAGCGT GCTCTTCTTC GTGAAGACCT CCAGGAACCC GGTGGGCTCG 
CTCCTGGTCG CGGTGAACCT CGACCCCTTC CGGGTCCGCA GCGCGAAACT GCGCCTGCCG 
CTGGGGCTTC TCGGCGTCCT GTCCGGACAG TCGTACCTGT TGCACGACCT GCTAAGCGGC 
GAGCGTTCCA TCTGGCAGGG GGAGTGGGCC AGCGTGACCC TCGACCCGCA GCTGGCGCCG 
GCAGGTATCT TCCGCCTCAG CACCTGGCTC CGCAAGGAAT CCGACTTCGA TTACTACTTA 
TAA 

 

Protein sequence

MEGRARIAIE GVHPQIDCGR FAVQRVTGDE MAVQADIFSD GHDEVVAVLL YRRQGDEVWQ 
ESQMQRLEND RWQGSFKLGE PGFYEYSLLG WVDHFRTWQR DLQKRFEAGQ DVSVDLKIGS 
SILSQAAKEA KEPAAAKLRQ AVEALNQEPE LEGAVALGLD ARLADLVSNC CARGLATRYH 
KDLVVRVDRK KALFSSWYEL FPRSLGGGEG RHGTLKECVE ILPDIAELGF DVLYLPPIHP 
IGTSKRKGKA NRVEAEPGDP GSPWAIGSPE GGHKSIHPEL GTLEDFDALV GEAQRHGIEI 
ALDIAFQCSP DHPYLKEHPE WFLWRPDGTV QYAENPPKKY QDIVPFNFET PHWQELWEEL 
KSIFFFWMDR GVRIFRVDNP HTKPFPMWEW IIAQAREKDP DVIFLAEAFT RQKIMYRLAK 
LGFSQSYSYF AWRNSKRELT EYLTELTRSD AKEFMRPNFW PNTPDILTEY LQYGGRAAFM 
IRVTLAATLS SNFGIYGPAF ELCIPTAEAA GSEEYKDAEK YEIRPWDRKA PGNIRELIAK 
LNRIRREHSA LQETCNVQFL ESDSDSVLFF VKTSRNPVGS LLVAVNLDPF RVRSAKLRLP 
LGLLGVLSGQ SYLLHDLLSG ERSIWQGEWA SVTLDPQLAP AGIFRLSTWL RKESDFDYYL