Gene PC1_4293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4293 
Symbol 
ID8135296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4859935 
End bp4861569 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content53% 
IMG OID644867615 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_003019843 
Protein GI253690653 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.016276 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTCGC AACGCAATCT TCTTCTCATC GCTCTGCTAT TCGTAACCTT TATGCTTTGG 
CAGGCTTGGG AAACGGATAA AAATCCGCCA GCAACCACGC AGGCCATACA GCAGGCGACG
AACGCAGTGA CCGGTGATGC TACCAACCAG GGCGTACCGG CTAGCGGTCA AGGCAAACTG
ATCACGGTGA AAACCGACGT GCTGTCGCTG ACCATCAACA CGCGTGGCGG CGACGTCGAG
CAAGCGCACC TGCTGGCTTA CCCGGATACA TTGGGTTCAG ATAAACCTTT CCATCTGCTG
GAAACCACAT CAGAGTTTGT CTATCAGGCT CAGAGCGGTT TGACCGGCAA AAACGGCCCG
GACAACCCGG CTAACGGCCC GCGTCCGCTG TTTACCACCA CACAAGATAG CTTCGAGCTG
GCTGATGGCC AGAACGAACT GCGCATTCCG ATGACGTACA CCGCTGCGGA CGGCGTAACC
TATACCAAAA CGTTTGTTCT GAAACGTGGC GACTATGCAC TGAACGTTGA CTACAGCGTC
AACAACACCA GCGCTCAGCC TCTGGAACTT ACGCTGTTCG GTCAGTTAAA ACAGTCTATC
GACTTGCCTA AGCACCGTGA CACCGGCAGC AGCAACTTTG CACTGCACAC CTACCGTGGC
GCGGCGTTTT CTTCCAGCGA AGACAAGTAC AAAAAGTACA GCTTCAGCGA CATGGACGAA
AATCTGAACA TCACAACCAA CAGTGGTTGG GTGGCGATGC TGCAACAGTA CTTCGCAACC
GCGTGGATTC CGACGACGGC AGGCGCGAAT ACGTTCTATA CCAATAAGCT GGGCAACGGT
CAGGCTGCAA TTGGCTTCAA GGCGGCGCCA GTTGTAGTTG CCGCGGGCAG TCAACAAAAT
CTGAACGCCA CCCTGTGGGT CGGCCCGGAA ATTCAGGACA AGATGGCTGC TGTCGCGCCG
CACCTAGACC TGACTGTAGA TTACGGTTGG CTGTGGTTTA TTTCTCAGCC GCTGTTTAAG
CTGCTGAAAT TCCTGCACGG CTTTATCGGC AACTGGGGCT TCTCCATCAT TGCCATTACC
TTTATCGTAC GTGGCGTGAT GTATCCGCTG ACGAAAGCGC AATACACCTC AATGGCGAAA
ATGCGCTTGC TGCAACCTAA ATTGCAGGCA ATGCGTGAGC GTATTGGTGA TGACAAACAG
CGCATGAGTC AGGAAATGAT GGCGCTGTAC AAGTCAGAGA AAGTGAACCC GCTGGGCGGT
TGCTTCCCGC TGCTGATTCA GATGCCAATC TTCCTGGCGC TGTATTACAT GCTGATGGGC
TCCGTTGAAC TGCGCCATGC ACCGTTCGCG CTGTGGATTC ATGACCTGTC TGCACAAGAC
CCGTACTACA TTCTGCCGAT CCTGATGGGC GTGACGATGT TCTTCATCCA GAAGATGTCA
CCAACCACCG TGACCGACCC AATGCAGCAG AAGATCATGA CCTACATGCC GGTCATCTTT
ACGGTCTTCT TCCTGTGGTT CCCGTCAGGT CTGGTTATGT ACTACATCGT CAGCAACCTG
GTTACCATTC TCCAGCAGCA GCTGATCTAC CGCGGTCTGG AAAAACGTGG TTTGCATAGC
CGCGAGAAAA AGTAA
 
Protein sequence
MDSQRNLLLI ALLFVTFMLW QAWETDKNPP ATTQAIQQAT NAVTGDATNQ GVPASGQGKL 
ITVKTDVLSL TINTRGGDVE QAHLLAYPDT LGSDKPFHLL ETTSEFVYQA QSGLTGKNGP
DNPANGPRPL FTTTQDSFEL ADGQNELRIP MTYTAADGVT YTKTFVLKRG DYALNVDYSV
NNTSAQPLEL TLFGQLKQSI DLPKHRDTGS SNFALHTYRG AAFSSSEDKY KKYSFSDMDE
NLNITTNSGW VAMLQQYFAT AWIPTTAGAN TFYTNKLGNG QAAIGFKAAP VVVAAGSQQN
LNATLWVGPE IQDKMAAVAP HLDLTVDYGW LWFISQPLFK LLKFLHGFIG NWGFSIIAIT
FIVRGVMYPL TKAQYTSMAK MRLLQPKLQA MRERIGDDKQ RMSQEMMALY KSEKVNPLGG
CFPLLIQMPI FLALYYMLMG SVELRHAPFA LWIHDLSAQD PYYILPILMG VTMFFIQKMS
PTTVTDPMQQ KIMTYMPVIF TVFFLWFPSG LVMYYIVSNL VTILQQQLIY RGLEKRGLHS
REKK