Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4293 |
Symbol | |
ID | 8135296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4859935 |
End bp | 4861569 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644867615 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_003019843 |
Protein GI | 253690653 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.016276 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTCGC AACGCAATCT TCTTCTCATC GCTCTGCTAT TCGTAACCTT TATGCTTTGG CAGGCTTGGG AAACGGATAA AAATCCGCCA GCAACCACGC AGGCCATACA GCAGGCGACG AACGCAGTGA CCGGTGATGC TACCAACCAG GGCGTACCGG CTAGCGGTCA AGGCAAACTG ATCACGGTGA AAACCGACGT GCTGTCGCTG ACCATCAACA CGCGTGGCGG CGACGTCGAG CAAGCGCACC TGCTGGCTTA CCCGGATACA TTGGGTTCAG ATAAACCTTT CCATCTGCTG GAAACCACAT CAGAGTTTGT CTATCAGGCT CAGAGCGGTT TGACCGGCAA AAACGGCCCG GACAACCCGG CTAACGGCCC GCGTCCGCTG TTTACCACCA CACAAGATAG CTTCGAGCTG GCTGATGGCC AGAACGAACT GCGCATTCCG ATGACGTACA CCGCTGCGGA CGGCGTAACC TATACCAAAA CGTTTGTTCT GAAACGTGGC GACTATGCAC TGAACGTTGA CTACAGCGTC AACAACACCA GCGCTCAGCC TCTGGAACTT ACGCTGTTCG GTCAGTTAAA ACAGTCTATC GACTTGCCTA AGCACCGTGA CACCGGCAGC AGCAACTTTG CACTGCACAC CTACCGTGGC GCGGCGTTTT CTTCCAGCGA AGACAAGTAC AAAAAGTACA GCTTCAGCGA CATGGACGAA AATCTGAACA TCACAACCAA CAGTGGTTGG GTGGCGATGC TGCAACAGTA CTTCGCAACC GCGTGGATTC CGACGACGGC AGGCGCGAAT ACGTTCTATA CCAATAAGCT GGGCAACGGT CAGGCTGCAA TTGGCTTCAA GGCGGCGCCA GTTGTAGTTG CCGCGGGCAG TCAACAAAAT CTGAACGCCA CCCTGTGGGT CGGCCCGGAA ATTCAGGACA AGATGGCTGC TGTCGCGCCG CACCTAGACC TGACTGTAGA TTACGGTTGG CTGTGGTTTA TTTCTCAGCC GCTGTTTAAG CTGCTGAAAT TCCTGCACGG CTTTATCGGC AACTGGGGCT TCTCCATCAT TGCCATTACC TTTATCGTAC GTGGCGTGAT GTATCCGCTG ACGAAAGCGC AATACACCTC AATGGCGAAA ATGCGCTTGC TGCAACCTAA ATTGCAGGCA ATGCGTGAGC GTATTGGTGA TGACAAACAG CGCATGAGTC AGGAAATGAT GGCGCTGTAC AAGTCAGAGA AAGTGAACCC GCTGGGCGGT TGCTTCCCGC TGCTGATTCA GATGCCAATC TTCCTGGCGC TGTATTACAT GCTGATGGGC TCCGTTGAAC TGCGCCATGC ACCGTTCGCG CTGTGGATTC ATGACCTGTC TGCACAAGAC CCGTACTACA TTCTGCCGAT CCTGATGGGC GTGACGATGT TCTTCATCCA GAAGATGTCA CCAACCACCG TGACCGACCC AATGCAGCAG AAGATCATGA CCTACATGCC GGTCATCTTT ACGGTCTTCT TCCTGTGGTT CCCGTCAGGT CTGGTTATGT ACTACATCGT CAGCAACCTG GTTACCATTC TCCAGCAGCA GCTGATCTAC CGCGGTCTGG AAAAACGTGG TTTGCATAGC CGCGAGAAAA AGTAA
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Protein sequence | MDSQRNLLLI ALLFVTFMLW QAWETDKNPP ATTQAIQQAT NAVTGDATNQ GVPASGQGKL ITVKTDVLSL TINTRGGDVE QAHLLAYPDT LGSDKPFHLL ETTSEFVYQA QSGLTGKNGP DNPANGPRPL FTTTQDSFEL ADGQNELRIP MTYTAADGVT YTKTFVLKRG DYALNVDYSV NNTSAQPLEL TLFGQLKQSI DLPKHRDTGS SNFALHTYRG AAFSSSEDKY KKYSFSDMDE NLNITTNSGW VAMLQQYFAT AWIPTTAGAN TFYTNKLGNG QAAIGFKAAP VVVAAGSQQN LNATLWVGPE IQDKMAAVAP HLDLTVDYGW LWFISQPLFK LLKFLHGFIG NWGFSIIAIT FIVRGVMYPL TKAQYTSMAK MRLLQPKLQA MRERIGDDKQ RMSQEMMALY KSEKVNPLGG CFPLLIQMPI FLALYYMLMG SVELRHAPFA LWIHDLSAQD PYYILPILMG VTMFFIQKMS PTTVTDPMQQ KIMTYMPVIF TVFFLWFPSG LVMYYIVSNL VTILQQQLIY RGLEKRGLHS REKK
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