| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4292 |
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| Symbol | trmE |
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| ID | 8135295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4858441 |
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| End bp | 4859805 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644867614 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003019842 |
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| Protein GI | 253690652 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.10556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA CCGACACCAT CGTCGCCCAA GCCACGCCAC CGGGACGCGG AGGCGTGGGT
ATTTTACGCG TATCAGGACG GGCCGCCGCC GAGGTGGCAC AGGCCGTTCT GGGTAAGCTC
CCTAAACCGC GTCACGCCGA TTATCTGCCG TTCCGTGATG CCAACGGCAC CACGCTCGAT
CAGGGTATCG CCCTCTGGTT TCCTGGCCCA AACTCCTTTA CCGGTGAAGA TGTGTTGGAG
CTTCAAGGAC ATGGTGGTCC GGTCATTCTT GATTTGCTCC TGAAACGTAT TCTGACACTG
CCCAACGTGC GCATTGCACG CCCCGGAGAA TTCTCTGAAC GCGCCTTCCT GAACGACAAA
CTCGATCTTG CGCAGGCAGA AGCTATTGCT GACCTGATTG ACGCCAGTTC GGAACAGGCT
GCTCGATCAG CGCTGAACTC TCTGCAAGGT GTATTTTCCA CCCGTGTAAA TCAGTTGGTG
GAAGCACTTA CTCACCTGCG AATCTACGTC GAGGCTGCCA TCGACTTCCC AGATGAGGAG
ATCGACTTTC TCTCCGATGG CAAAATTGAG TCACAGCTCA ATGGCGTGAT GGCCGATCTG
GATGCCGTCC GAGCCGAAGC ACATCAGGGT AGCCTGCTGC GTGAAGGAAT GAAGGTCGTG
ATCGCGGGTC GTCCTAATGC GGGTAAATCC AGCCTACTCA ATGCGTTAGC AGGTCGTGAA
GCCGCGATTG TGACGGATAT TGCAGGAACC ACGCGCGACG TATTACGTGA ACATATCCAC
ATCGACGGCA TGCCGCTGCA TATCATCGAC ACCGCCGGGC TACGCGATGC CAGCGACGAA
GTGGAACGCA TTGGTATTGA GCGTGCCTGG CAGGAAATCG AGCAGGCCGA TCGCGTACTA
TTCATGGTCG ATGGCACCAC TACGCAGGCA ACTGAACCTG AGCAGATCTG GCCGGAATTT
ATGGCTCGCC TGCCAAAAAC GTTGCCGATT ACCGTAGTGC GCAATAAGGC TGACGTTACT
GGTGAAACGC TTGGTATCGA GGATGTGAAC ACTCACTCAC TTATCCGTCT TTCCGCCCGT
ACGGGTGACG GTGTGGATAC GCTACGCGAT CATCTCAAGC AAAGCATGGG ATTCACCAGC
AACACCGAAG GCGGTTTTCT GGCACGACGC CGCCACCTGC AAGCACTGGA ACTGGCAGCC
CAGCATCTGA TTCAGGGGAA AGAACAGCTG GTGAGCGCCT ACGCGGGCGA GCTGCTGGCA
GAAGAACTAC GGCTGGCACA GCAGTCCCTG AGTGAAATCA CCGGTGAATT CACCTCTGAC
GATCTGTTAG GCCGTATCTT TTCGAGCTTC TGTATCGGGA AGTAA
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| Protein sequence | MSNTDTIVAQ ATPPGRGGVG ILRVSGRAAA EVAQAVLGKL PKPRHADYLP FRDANGTTLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTL PNVRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSALNSLQG VFSTRVNQLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE SQLNGVMADL DAVRAEAHQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLRDASDE VERIGIERAW QEIEQADRVL
FMVDGTTTQA TEPEQIWPEF MARLPKTLPI TVVRNKADVT GETLGIEDVN THSLIRLSAR
TGDGVDTLRD HLKQSMGFTS NTEGGFLARR RHLQALELAA QHLIQGKEQL VSAYAGELLA
EELRLAQQSL SEITGEFTSD DLLGRIFSSF CIGK
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