| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4282 |
|---|
| Symbol | |
|---|
| ID | 8135285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4844710 |
|---|
| End bp | 4846212 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644867604 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003019832 |
|---|
| Protein GI | 253690642 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAC CAAAGAAGTG GCTGATCCTG GCCATTGTTT CCAGTGCGCT GTTCCTGATT
GTTATCGACA TGACGGTGCT GTACACCGCA CTCCCGACAC TGACTCACGA CCTACACGCC
ACCGCATCGG ACAAGCTGTG GATCGTTAAT ATCTACGCGT TGGTTGCCTC CGGCTTGCTG
CTGGGAATGG GTACGCTGGG CGATAAGCTG GGTCATAAAC CTCTGTTTAT TTCCGGATTG
CTGGTCTTCG GCGCGGCGTC ATTGTTCGCC GCCTATTCTC CCACTCCCCA CATGCTCATC
GCCGCACGCG CTCTGCTGGC GGTTGGTGCG GCGATGATGA TGCCCGCCAC GCTCTCGATT
ATTCGACTGA CCTTTTCTGA TGAACGGGAA CGCGCACTGG CGATTGGTAT CTGGGCTGCG
GTGGCATCCG GCGGTGCCGC GTTTGGCCCC GTCATGGGCG GGATACTGCT TGAATACTTC
TGGTGGGGCT CGGTTTTCCT CATCAACGTA CCGGTCGTTC TGCTAGCGCT CATCATGGGA
ATCACCGTCA TTCCCCACCG GCCGGGTAAT GCTTCACACC GCTGGGATTT CATCGGTTCT
CTATTAATTA TGGTGGGTTT GATTGGTGTA ACCTATGCCA TAAAAGAGCT GGGCAAGCGG
GTTCCGTCTT ATGAAGATGC GCTAATCGCG CTGCTGATCG GCGTGGCGTT TATTACCCTG
TTTGTGCGGC GTCAGCGTAA CAGCCAGCAC CCTCTGGTCG ATTTCTCTCT CTTCCGCCTG
CGACCTTTCA GCGCAGCCGT AGCCGCGGCT ATCGTAGCGG CGGCCGCATT AATCGGAATG
GAACTGGCTT TCACCCAGCG ACTACAGCTT GTGGTCGGGC TGTCTCCGCT ACAGGCCGGG
CTGTTTATTT TGCCTCTGTC ATTGGCGTCC TTTATCTCCG GCCCGTTAAC CGGAAGAATG
CTGCCACACG TAAATAGCGG GACAATGTTA TCCGCAGGGC TGCTGGTTTC CGGGCTTGGT
ATGGGAAGCT ATCTGCTGCT CCATAATGCC CCCATCATCG TACAAGTCAT CAGCCTGATG
GTGATTGGGG CTGGCGTAGG TTCGACCATG ACGGCCGCAT CGAGCACCAT TATGCAGGTT
GCTCCAGCAT CAAAAGCAGG GATGGCGGCC TCAATCGAAG AGGTGTCCTA TGAATTAGGG
GGTGCGACGG GCGTGACGCT GATGGGCAGT TTGCTGTCTT TCGCTTATTC TGCGACGTTT
ATGCTGCCTG CTGGGTTTAC CGCACCGGAC ACCGCGTATG ACAGCCTGGA TGAGGCGTTA
ATTTTTGCCG AATCCTTACC GGAAAATATG CAGCAACTTC TGACCGCACA GGCACATTCC
GCCTTTGACT CCGGGTTTTC CATCGTACTG GCAGCGGCAA CGCTGATCCT GCTGTTAACG
TCCGCCTTCG TCTGGACAAC GCGCAATCAT AAACAACATC GTAATCGGGC AGCTGACGCG
TAG
|
|---|
| Protein sequence | MQSPKKWLIL AIVSSALFLI VIDMTVLYTA LPTLTHDLHA TASDKLWIVN IYALVASGLL
LGMGTLGDKL GHKPLFISGL LVFGAASLFA AYSPTPHMLI AARALLAVGA AMMMPATLSI
IRLTFSDERE RALAIGIWAA VASGGAAFGP VMGGILLEYF WWGSVFLINV PVVLLALIMG
ITVIPHRPGN ASHRWDFIGS LLIMVGLIGV TYAIKELGKR VPSYEDALIA LLIGVAFITL
FVRRQRNSQH PLVDFSLFRL RPFSAAVAAA IVAAAALIGM ELAFTQRLQL VVGLSPLQAG
LFILPLSLAS FISGPLTGRM LPHVNSGTML SAGLLVSGLG MGSYLLLHNA PIIVQVISLM
VIGAGVGSTM TAASSTIMQV APASKAGMAA SIEEVSYELG GATGVTLMGS LLSFAYSATF
MLPAGFTAPD TAYDSLDEAL IFAESLPENM QQLLTAQAHS AFDSGFSIVL AAATLILLLT
SAFVWTTRNH KQHRNRAADA
|
|---|
| |