| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4275 |
|---|
| Symbol | |
|---|
| ID | 8135278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4837618 |
|---|
| End bp | 4838955 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644867597 |
|---|
| Product | Xanthine/uracil/vitamin C permease |
|---|
| Protein accession | YP_003019825 |
|---|
| Protein GI | 253690635 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2252] Permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT CACAACCCGG TCTTGCTACC GAGCAGGGCC TGCTGGAGCG CGTGTTTAAA
CTTAAACAAC ACGGCACGAC AGCACGTACG GAAACGATTG CCGGTTTCAC GACGTTTTTG
ACGATGGTCT ACATCGTTTT TGTTAACCCG CAAATCTTGG GTGCGGCGGG GATGGATACC
AAAGCGGTCT TTGTGACCAC CTGCCTGATC GCAGCATTTG GTAGTATTTT GATGGGATTG
CTGGCTAACC TGCCTGTGGC GCTGGCTCCG GCAATGGGGC TGAATGCGTT TTTCGCGTTT
GTTGTCGTGG GGGCGATGGG GCTGCCATGG CAGGTTGCGA TGGGTGCTAT TTTCTGGGGC
GCAATCGGTT TCCTGTTGCT GACCATCTTC CAGATTCGCT ACTGGATGAT CGCCAATATT
CCGCTCAGTC TGCGTTTGGG GATCGCCAGC GGTATCGGGC TGTTCATTGC CATGATGGGC
TTGAAAAATG CCGGTATTAT CGTTCCTAAT CCAGAAACAC TGGTGACGAT TGGCAATCTG
ACCTCACACA GCGTGCTGCT GGGCGCTCTG GGCTTTTTCA TTATTGTGGC GCTGGCGTCA
CGTAATATTC ACGCCGCGGT ACTGATCTCG ATCGTGGTAA CCACCTCGAT TGGCCTGCTG
CTGGGCGATG TTAAATTTGC TGGCGTGTTC TCTATGCCAC CGAGCGTAAC GTCGGTGGTT
GGTCAGGTTG ATCTGGCTGG GGCGCTGAAC CTCGGGATGT CCGGTATTAT TTTCTCTTTC
ATGCTGGTTA ACCTGTTTGA CTCCTCCGGT ACGCTGATTG GCGTGACGGA TAAAGCCGGT
CTGGTCGATG CGCGCGGTAA GTTCCCGCGT ATGAAGCAGG CGCTGTATGT TGATAGCGTT
AGCTCTGTGG CTGGTTCGTT TATCGGGACC TCCTCCGTTA CGGCGTATAT TGAAAGCTCT
TCTGGCGTGT CCGTTGGTGG ACGCACCGGC CTGACCGCGG TGGTGGTGGG GCTGCTGTTC
CTGCTGGTGA TCTTCCTGTC ACCGCTGGCG GGGATGGTGC CTGCCTATGC GGCCGCTGGC
GCACTGATTT ACGTGGGTGT ACTGATGACA TCCAGCCTGG CGCGTGTGAA GTGGGATGAC
CTGACGGAAG CCGTTCCAGC CTTTATTACC GCGGTGATGA TGCCGTTCAG CTTCTCGATT
ACTGAAGGGA TCGCACTGGG TTTCATTTCT TACTGTGTGA TGAAGTTGGC GACGGGACGC
TGGCGTGAAA TCAGCCCATG TGTGGTTGTG GTTGCGCTGC TGTTCCTGCT GAAAATCGTG
TTTATCGACG CGCATTAA
|
|---|
| Protein sequence | MNKSQPGLAT EQGLLERVFK LKQHGTTART ETIAGFTTFL TMVYIVFVNP QILGAAGMDT
KAVFVTTCLI AAFGSILMGL LANLPVALAP AMGLNAFFAF VVVGAMGLPW QVAMGAIFWG
AIGFLLLTIF QIRYWMIANI PLSLRLGIAS GIGLFIAMMG LKNAGIIVPN PETLVTIGNL
TSHSVLLGAL GFFIIVALAS RNIHAAVLIS IVVTTSIGLL LGDVKFAGVF SMPPSVTSVV
GQVDLAGALN LGMSGIIFSF MLVNLFDSSG TLIGVTDKAG LVDARGKFPR MKQALYVDSV
SSVAGSFIGT SSVTAYIESS SGVSVGGRTG LTAVVVGLLF LLVIFLSPLA GMVPAYAAAG
ALIYVGVLMT SSLARVKWDD LTEAVPAFIT AVMMPFSFSI TEGIALGFIS YCVMKLATGR
WREISPCVVV VALLFLLKIV FIDAH
|
|---|
| |