Gene PC1_4248 details

Gene Information

• Locus tag: PC1_4248
• ID: 8135251
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 4807927
• End bp: 4809816
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 644867570
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_003019798
• Protein GI: 253690608
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.778247
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTATC CAGATCCATT TGACGTCATC GTGATCGGTG GCGGTCATGC CGGAACAGAA 
GCTGCGATGG CTTCTGCCCG AATGGGCCAA CAGACGCTTT TACTCACACA CAATATCGAT 
ACGCTAGGAC AAATGTCTTG TAACCCGGCG ATTGGCGGTA TTGGAAAAGG TCATCTGGTT 
AAAGAGATCG ATGCCATGGG AGGGTTGATG GCGCGTGCTG TCGACCAGGC AGGGATACAG 
TTTAGGATAC TAAACAGCAG TAAAGGCCCA GCGGTCAGAG CCACTCGCGC ACAAGCAGAC 
CGTGTGCTCT ACCGTCAGGC AATTCGCACC GCTCTGGAGA ATCAGCCAAA CCTGACGATC 
TTCCAGCAAG CAGTTGACGA TCTGATTGTA GAAAACGATC GTGTCGTCGG TGCCGTTACT 
CAGATGGGAC TAAAGTTTCG TGCAAAAGCC GTTGTATTAA CGGTAGGCAC TTTCCTCGAC 
GGCAAGATTC ACATTGGCCT GGATAACTAC AGCGGTGGGC GTGCAGGCGA TCCGCCTTCT 
ATTCCGCTGG CGCGTCGTCT TCGTGAACTA CCTCTGCGCG TTAACCGCCT GAAGACCGGT 
ACTCCGCCGC GTATTGACGC CAGAACGATC GATTTTAGCG TGCTGGCTCA ACAGCACGGT 
GACAACCCAA TGCCAGTTTT CTCGTTCCTG GGGAATGCGA GCCAGCATCC GGCACAAATG 
CCGTGCTACA TCACGCACAC TAACGAGAAA ACCCATGACG TGATCCGTAA TAATCTGGAT 
CGTAGCCCGA TGTATGCTGG GATCATCGAA GGGATCGGCC CGCGTTATTG CCCCTCGATC 
GAAGACAAAG TCATGCGTTT CGCCGATCGA AACACACATC AGATCTTTCT TGAGCCAGAA 
GGACTGACCA GCAATGAAAT TTATCCTAAC GGGATCTCAA CCAGTTTGCC GTTTGACGTT 
CAGTGGCAGA TTGTTCGTTC AATGACGGGA ATGGAAAATG CACGCATTGT CCGCCCTGGC 
TATGCCATTG AGTACGATTT CTTCGATCCG CGCGATCTGA AGCCAACGCT GGAAAACAAA 
TTTGTTCATG GTTTGTTCTT CGCTGGGCAA ATCAACGGTA CCACAGGGTA TGAAGAAGCC 
GCTGCACAGG GCATGCTGGC AGGGCTGAAT GCGGCTCGAT TGGCTGCCGA TAAGGAAGGC 
TGGTCACCGC GTCGCGATCA GGCCTATCTC GGCGTGCTGG TTGACGATCT CTGTACGCTG 
GGGACGAAAG AACCCTACCG TATGTTTACG TCGCGTGCCG AATATCGTCT GATGCTGCGC 
GAAGATAACG CCGATCTCCG TTTGACTGAA ATCGGTCGCG AACTAGGGAT GGTCGACGAT 
CATCGCTGGG CACGTTTCAA CGAGAAACTT GAGAGTATTG AAAAAGAGCG TCAGCGCCTG 
CGCGATATTC ACATTCACCC GCAGTCTGAG CTGTTAGATC AAGTTAACTC ACTGCTGAAA 
ACACCGTTGT CCCGTGAAGC GAACGGTGAA GAGCTGCTGC GTCGTCCGGA AGTGGATTAC 
GTACAACTTA CCGCGCTACC GCTGTTTGCT CCGGGATTAA CCGACGAGCA GGCTGCCGAG 
CAGGTTGAAA TTCAGGTCAA ATACGAAGGG TATATTGCTC GTCAACAGGA TGAAATCGAG 
AAACAGTTGC GTAATGAAAA TACGTTGCTG CCTGCCGATC TGGATTACAA GCAGGTTAAC 
GGGTTGTCCA ACGAGGTTAT TGCCAAACTG AACGATCACA AACCTTCGTC TATCGGTCAG 
GCCTCGCGTA TTTCCGGCAT AACGCCTGCG GCAATCTCCA TTTTGCTGAT CTGGCTTAAA 
AAACAGGGTC TGCTGCGCCG CAGCGCCTGA 

 

Protein sequence

MFYPDPFDVI VIGGGHAGTE AAMASARMGQ QTLLLTHNID TLGQMSCNPA IGGIGKGHLV 
KEIDAMGGLM ARAVDQAGIQ FRILNSSKGP AVRATRAQAD RVLYRQAIRT ALENQPNLTI 
FQQAVDDLIV ENDRVVGAVT QMGLKFRAKA VVLTVGTFLD GKIHIGLDNY SGGRAGDPPS 
IPLARRLREL PLRVNRLKTG TPPRIDARTI DFSVLAQQHG DNPMPVFSFL GNASQHPAQM 
PCYITHTNEK THDVIRNNLD RSPMYAGIIE GIGPRYCPSI EDKVMRFADR NTHQIFLEPE 
GLTSNEIYPN GISTSLPFDV QWQIVRSMTG MENARIVRPG YAIEYDFFDP RDLKPTLENK 
FVHGLFFAGQ INGTTGYEEA AAQGMLAGLN AARLAADKEG WSPRRDQAYL GVLVDDLCTL 
GTKEPYRMFT SRAEYRLMLR EDNADLRLTE IGRELGMVDD HRWARFNEKL ESIEKERQRL 
RDIHIHPQSE LLDQVNSLLK TPLSREANGE ELLRRPEVDY VQLTALPLFA PGLTDEQAAE 
QVEIQVKYEG YIARQQDEIE KQLRNENTLL PADLDYKQVN GLSNEVIAKL NDHKPSSIGQ 
ASRISGITPA AISILLIWLK KQGLLRRSA