Gene PC1_4242 details

Gene Information

• Locus tag: PC1_4242
• Symbol: trkD
• ID: 8135245
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 4800210
• End bp: 4802078
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644867564
• Product: potassium transport protein Kup
• Protein accession: YP_003019792
• Protein GI: 253690602
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3158] K+ transporter
• TIGRFAM ID: [TIGR00794] potassium uptake protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTCAG AACATAAACG TTCGCTTCCG GCTGTCACGC TGGCGGCCAT CGGGGTGGTT 
TATGGAGATA TAGGAACCAG CCCTCTTTAT ACGTTAAGGG AATGTTTATC AGGGCAGTTT 
GGTTTTGGGG TCGAGCCTGA TTCGGTCTTT GGTTTTCTTT CACTGATCTT TTGGCTGTTG 
GTTCTCGTTG TTTCGCTGAA ATACCTGACG TATGTGATGC GTGCTGACAA CGCTGGCGAA 
GGTGGGATTC TAACCCTTAT GTCGCTAGCC GGGCGTAATA CTTCCGATCG CATGACGTCC 
GTGCTGGTAA TCATGGGGTT AATTGGCGGC AGCTTCTTCT ATGGGGAAGT GGTCATCACG 
CCAGCCATCT CGGTCATGTC GGCGATGGAA GGGCTGGAAA TTGCCGCGCC ATCGATGGAC 
AGCTATATCG TCCCGCTATC TATTGTCGTT CTGACATTAC TCTTTATCAT TCAAAAACAC 
GGTACAGGCA GTGTAGGCAA GCTGTTTGCG CCCGTGATGC TGATTTGGTT TTTAACGCTC 
GGCGTGCTGG GCGCGCGAAG TATTATCGCT AACCCTGAAG TCTTGCAGGC GTTGAACCCG 
ATGTACGCCG TTCGCTTCTT TATCGAATAT AAAGCCGTAT CGTTCTTCGC GCTGGGAGCA 
GTGGTGCTGG CGATTACCGG GGTTGAGGCG CTGTATGCCG ATATGGGGCA CTTCGGTAAA 
TTCCCGATTC GACTGGCCTG GTTTACGGTG GTGCTGCCGT CGCTGGTGTT AAATTACTTC 
GGACAGGGCG CGCTGCTGTT GAAGAACCCG GAAGCGATCA AGAACCCTTT CTTTCTGCTG 
GCGCCAGATT GGGCGCTGAT TCCTCTGATG ATATTGGCGA CGCTGGCGAC AATCATTGCT 
TCGCAGGCGG TGATTTCCGG TGTTTTCTCC CTGACGCGTC AGGCGGTGCG GTTGGGCTAT 
TTGCCGCCGA TGCGTATCGT ACACACGTCA GATATGGAAT CCGGTCAGAT TTATATTCCT 
GCCATTAACT GGATGCTGTA TATCGCTGTC GTCATCGTGA TTGTCAGCTT TGAGCATTCG 
AGCAATCTGG CTGCGGCTTA CGGGATTGCG GTAACGGGCA CGATGGTGAT TACCAGTATT 
CTGTTCTGTA CGGTGGCGGT GAAGAACTGG CTCTGGAACC GCTATCTGGC GTGGGTATTG 
CTGGCGGGGT TACTGGTTAT TGATGTACCG ATGTTTTTGG CGAACGTGGT CAAAATTCTG 
TCCGGCGGCT GGTTGCCGCT AGCGCTGGGC ATGGTGATGT TTATTATCAT GACGACGTGG 
AAAAGCGAGC GCTTCAGGCT GCTGCGTCGG TTGCATGAAC ACGGTAACTC GCTGGATGCC 
ATGATTGCGT CGCTGGAGAA ATCGCCGCCG ACGCGTGTAC CGGGAACTGC CGTCTATTTC 
TCGCGTGCGA CTCGCGTGAT CCCGTTTGCG CTGTTGCATA ACCTTAAACA TAACAAGATC 
CTGCACGAGC GTGTGGTGCT GTTGACCATG CGAACGGAGG ATGCGCCTTA TGTGCTGAAC 
GCTCGCCGCG TGACGGTTGA ACAGCTTTCG CCGACGTTCT GGCGCGTGAT TGCCAACTAT 
GGCTGGCGTG AAACGCCGGA TGTGGAAGAG GTCTTTCAGC GCTGTTGGCA AGATGGGTTA 
ACCTGCCAAA TGATGGAAAC GTCTTTCTTT ATGTCCAATG AATCGCTGAT TATCGGCGAA 
CGCCCGTGGT ATCTGCGCCT GCGCGGTAAG CTATTCATGA TGCTCAGCCG CAATGCGCTG 
CGAGCGGCGG ATCAGTTTGA AATACCGCCG AACAGGCTGA TTGAGCTGGG GATACAGGTC 
GAGATTTAA 

 

Protein sequence

MSSEHKRSLP AVTLAAIGVV YGDIGTSPLY TLRECLSGQF GFGVEPDSVF GFLSLIFWLL 
VLVVSLKYLT YVMRADNAGE GGILTLMSLA GRNTSDRMTS VLVIMGLIGG SFFYGEVVIT 
PAISVMSAME GLEIAAPSMD SYIVPLSIVV LTLLFIIQKH GTGSVGKLFA PVMLIWFLTL 
GVLGARSIIA NPEVLQALNP MYAVRFFIEY KAVSFFALGA VVLAITGVEA LYADMGHFGK 
FPIRLAWFTV VLPSLVLNYF GQGALLLKNP EAIKNPFFLL APDWALIPLM ILATLATIIA 
SQAVISGVFS LTRQAVRLGY LPPMRIVHTS DMESGQIYIP AINWMLYIAV VIVIVSFEHS 
SNLAAAYGIA VTGTMVITSI LFCTVAVKNW LWNRYLAWVL LAGLLVIDVP MFLANVVKIL 
SGGWLPLALG MVMFIIMTTW KSERFRLLRR LHEHGNSLDA MIASLEKSPP TRVPGTAVYF 
SRATRVIPFA LLHNLKHNKI LHERVVLLTM RTEDAPYVLN ARRVTVEQLS PTFWRVIANY 
GWRETPDVEE VFQRCWQDGL TCQMMETSFF MSNESLIIGE RPWYLRLRGK LFMMLSRNAL 
RAADQFEIPP NRLIELGIQV EI