Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4227 |
Symbol | |
ID | 8135226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4778931 |
End bp | 4781720 |
Gene Length | 2790 bp |
Protein Length | 929 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644867545 |
Product | DNA polymerase I |
Protein accession | YP_003019777 |
Protein GI | 253690587 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
TIGRFAM ID | [TIGR00593] DNA polymerase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0477521 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTCAGA TTGCAGAAAA CCCTTTAATA CTGGTAGACG GTTCATCCTA TTTGTATCGT GCTTATCACG CTTTTCCACC GTTAACAAAT AGCGCGGGAG AAGCCACCGG TGCAATGTAT GGCGTACTGA ATATGCTACG CAGTTTGCTG CTGCAATATC AGCCCAGCCA TGTTGCCGTT GTTTTTGATG CGAAAGGGAA AACGTTTCGC GATGAGCTGT TCGAAAACTA TAAGGCTCAT CGCCCACCTA TGCCAGAGGA TCTGCGCGAA CAGATAGAGC CTCTGCATAA TATGGTGAAA GCGATGGGGC TGCCGCTTTT GGCGGTTTCT GGCGTAGAAG CGGATGATGT GATCGGCACG CTTGCCGTTC AGGCGGAAAA AGCAGGTAAG CCAGTGCTGA TCAGTACCGG CGATAAAGAT ATGGCACAGC TGGTGACGCC AAGTGTGACG CTCATTAATA CCATGAATAA CAGCATTCTT GGCCCACAGG AAGTGTGTGA TAAATACGGT ATTCCTCCAG AGCTGATTAT CGATTTCCTT GCGCTGATGG GAGATGCGTC GGATAACATT CCCGGCGTAC CCGGCGTGGG TGAAAAAACG GCGCAGGCGC TATTGCAAGG TCTTGGTGGG CTGGATTCGC TGTATGCCAA CCTGGATAAA ATTGCCGAGC TCTCTTTCCG TGGTGCGAAA ACCATGGCGC CGAAGCTGGA ACAGCATAAA GACGTGGCCT ACCTCTCTTA TCAGCTTGCC ACCATTAAAA CGGATGTTGA GTTGGATCTC AGCAGCGAGC AGCTTACCGT TAATGAACCT GACGTAGATG AGCTGCATCG TCTCTTTTCC CGTTATGAAT TTAAACGCTG GTTATCAGAT GTTGAATCCG GTACCTGGCT GGAAGGTAAA AAAAGCAGTC AGCCTGTTCC GGCTGTGAGC AAAGTGGTTG TTGAGCAGGC TGCTGAAGAG AGCAACGCGC CAGCGCTTTC TGCCGACGGT TATGTCACGA TTCTTGATGA AGAAACGCTG CTCGATTGGA TTGAGCGTCT AAAACAGGCT GAGGTTTTCG CTTTTGATAC GGAAACCGAC GGGCTGGATA CGCTCACCGC CAATCTGATT GGTTTGTCAT TTGCGATTAA GCCAGGTGAA GCGGCTTATT TGCCATTAGC GCATGACTAT CTGGATGCGC CGGAACAGTT GGATCGCGCC AAGGTACTGG CCTTGTTCAA GCCGCTACTG GAAGATGAGA AGCTGCTTAA GATTGGCCAG AATCTCAAAT TTGATAAAGG CGTGATGCAG CGGTACGACA TTGATTTGCG CGGTATCGCG TTTGATACCA TGTTGGAATC CTACGTGCTC GACAGCGTGG CGGGCCGCCA CGATATGGAT AGTCTGGCCG AACGCTATCT GAACCACAAA ACCATTACCT TTGAAGAGAT CGCGGGTAAG GGGAAAAATC AGCTGACGTT TAATCAGATC GCACTGGAAC AGGCTGGGCC TTATGCGGCC GAGGATGCGG ACGTCACGCT GCATCTGCAT CAGAAGCTGT GGGGGAAACT GCAACCGCAT GCCGACCTGT GTCAGGTCTT CCAGACTATC GATATGCCGC TGGTGCCAGT TTTATCCCGC ATCGAGCGTA CAGGCGTGCT GATCGATCCT GCGATTCTGG CGGAGCACTC AAAAGAGCTG ACAACCCGTC TGGCGGAGCT GGAAACACAA GCGTATGAAC TGGCGGGCGA AGAGTTCAAT CTCTCATCGA CCAAGCAGCT ACAGGGTATT CTGTATGAAA AGCAAAAGCT GCCGATTCTG AAGAAAACGC CAAAAGGCGC ACCGTCAACT AATGAAGAAG TGTTGGCTGA ACTGGCGCTG GATTACCCTC TGCCGAAGCT GATTCTGGAA TATCGTGGCT TGGCCAAGCT GAAATCTACT TACACTGACA AGTTACCGCT GATGATCAAT CCGGCGACGA AGCGTGTGCA TACGTCTTAT CACCAGGCTG TCACTGCGAC CGGGCGTTTG TCTTCCAGCG ATCCTAACCT GCAAAACATC CCGGTGCGTA ATGACGAAGG GCGCCGTATT CGTCAGGCAT TCATTGCGCC GAAGGGCTAC AGCATTGTGG CGGCGGACTA CTCGCAAATC GAACTGCGTA TCATGGCGCA CTTATCCGGT GATAAAGGGC TGTTGAACGC GTTTGCGAAC GGACTGGATA TCCACCGGGC AACGGCGTCA GAAGTGTTTG GCACTGCGCT GGATAAGGTG ACATCAGAAC AGCGTCGCAG TGCGAAAGCG ATCAACTTTG GTTTGATCTA CGGCATGAGC GCGTTTGGTC TGTCGCGTCA GTTGAATATT CCCCGTAGCG AATCGCAGAA ATACATGAAC CTGTATTTTG AGCGCTATCC AGGTGTGCAG GATTACATGG AACGCACGCG CCAACAGGCC GCGGAACATG GCTATGTGTC TACATTGGAT GGTCGCCGTC TCTACCTGCC AGACATCCAT TCTCGTAATG CGATGGCGCG TAAAGGTGCG GAACGTGCGG CGATTAACGC CCCGATGCAG GGCACCGCTG CTGACATTAT TAAGAAAGCG ATGATCGCGA TTGACGATTG GCTACAGAAA GACGCACCGC AGGTGAAAAT GATCATGCAG GTTCACGATG AGCTGGTTTT CGAGATCCAT GATTCGGTTA TTGAAGAATC CATTAGTAAA ATCAAAACAT TAATGGAAGG TTGTATGGAA TTGAATGTCC CGCTGCAGGT TGACATTGGT ACGGGCATGA ACTGGGATGA AGCACATTAA
|
Protein sequence | MAQIAENPLI LVDGSSYLYR AYHAFPPLTN SAGEATGAMY GVLNMLRSLL LQYQPSHVAV VFDAKGKTFR DELFENYKAH RPPMPEDLRE QIEPLHNMVK AMGLPLLAVS GVEADDVIGT LAVQAEKAGK PVLISTGDKD MAQLVTPSVT LINTMNNSIL GPQEVCDKYG IPPELIIDFL ALMGDASDNI PGVPGVGEKT AQALLQGLGG LDSLYANLDK IAELSFRGAK TMAPKLEQHK DVAYLSYQLA TIKTDVELDL SSEQLTVNEP DVDELHRLFS RYEFKRWLSD VESGTWLEGK KSSQPVPAVS KVVVEQAAEE SNAPALSADG YVTILDEETL LDWIERLKQA EVFAFDTETD GLDTLTANLI GLSFAIKPGE AAYLPLAHDY LDAPEQLDRA KVLALFKPLL EDEKLLKIGQ NLKFDKGVMQ RYDIDLRGIA FDTMLESYVL DSVAGRHDMD SLAERYLNHK TITFEEIAGK GKNQLTFNQI ALEQAGPYAA EDADVTLHLH QKLWGKLQPH ADLCQVFQTI DMPLVPVLSR IERTGVLIDP AILAEHSKEL TTRLAELETQ AYELAGEEFN LSSTKQLQGI LYEKQKLPIL KKTPKGAPST NEEVLAELAL DYPLPKLILE YRGLAKLKST YTDKLPLMIN PATKRVHTSY HQAVTATGRL SSSDPNLQNI PVRNDEGRRI RQAFIAPKGY SIVAADYSQI ELRIMAHLSG DKGLLNAFAN GLDIHRATAS EVFGTALDKV TSEQRRSAKA INFGLIYGMS AFGLSRQLNI PRSESQKYMN LYFERYPGVQ DYMERTRQQA AEHGYVSTLD GRRLYLPDIH SRNAMARKGA ERAAINAPMQ GTAADIIKKA MIAIDDWLQK DAPQVKMIMQ VHDELVFEIH DSVIEESISK IKTLMEGCME LNVPLQVDIG TGMNWDEAH
|
| |