Gene PC1_4227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4227 
Symbol 
ID8135226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4778931 
End bp4781720 
Gene Length2790 bp 
Protein Length929 aa 
Translation table11 
GC content51% 
IMG OID644867545 
ProductDNA polymerase I 
Protein accessionYP_003019777 
Protein GI253690587 
COG category[L] Replication, recombination and repair 
COG ID[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0477521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCAGA TTGCAGAAAA CCCTTTAATA CTGGTAGACG GTTCATCCTA TTTGTATCGT 
GCTTATCACG CTTTTCCACC GTTAACAAAT AGCGCGGGAG AAGCCACCGG TGCAATGTAT
GGCGTACTGA ATATGCTACG CAGTTTGCTG CTGCAATATC AGCCCAGCCA TGTTGCCGTT
GTTTTTGATG CGAAAGGGAA AACGTTTCGC GATGAGCTGT TCGAAAACTA TAAGGCTCAT
CGCCCACCTA TGCCAGAGGA TCTGCGCGAA CAGATAGAGC CTCTGCATAA TATGGTGAAA
GCGATGGGGC TGCCGCTTTT GGCGGTTTCT GGCGTAGAAG CGGATGATGT GATCGGCACG
CTTGCCGTTC AGGCGGAAAA AGCAGGTAAG CCAGTGCTGA TCAGTACCGG CGATAAAGAT
ATGGCACAGC TGGTGACGCC AAGTGTGACG CTCATTAATA CCATGAATAA CAGCATTCTT
GGCCCACAGG AAGTGTGTGA TAAATACGGT ATTCCTCCAG AGCTGATTAT CGATTTCCTT
GCGCTGATGG GAGATGCGTC GGATAACATT CCCGGCGTAC CCGGCGTGGG TGAAAAAACG
GCGCAGGCGC TATTGCAAGG TCTTGGTGGG CTGGATTCGC TGTATGCCAA CCTGGATAAA
ATTGCCGAGC TCTCTTTCCG TGGTGCGAAA ACCATGGCGC CGAAGCTGGA ACAGCATAAA
GACGTGGCCT ACCTCTCTTA TCAGCTTGCC ACCATTAAAA CGGATGTTGA GTTGGATCTC
AGCAGCGAGC AGCTTACCGT TAATGAACCT GACGTAGATG AGCTGCATCG TCTCTTTTCC
CGTTATGAAT TTAAACGCTG GTTATCAGAT GTTGAATCCG GTACCTGGCT GGAAGGTAAA
AAAAGCAGTC AGCCTGTTCC GGCTGTGAGC AAAGTGGTTG TTGAGCAGGC TGCTGAAGAG
AGCAACGCGC CAGCGCTTTC TGCCGACGGT TATGTCACGA TTCTTGATGA AGAAACGCTG
CTCGATTGGA TTGAGCGTCT AAAACAGGCT GAGGTTTTCG CTTTTGATAC GGAAACCGAC
GGGCTGGATA CGCTCACCGC CAATCTGATT GGTTTGTCAT TTGCGATTAA GCCAGGTGAA
GCGGCTTATT TGCCATTAGC GCATGACTAT CTGGATGCGC CGGAACAGTT GGATCGCGCC
AAGGTACTGG CCTTGTTCAA GCCGCTACTG GAAGATGAGA AGCTGCTTAA GATTGGCCAG
AATCTCAAAT TTGATAAAGG CGTGATGCAG CGGTACGACA TTGATTTGCG CGGTATCGCG
TTTGATACCA TGTTGGAATC CTACGTGCTC GACAGCGTGG CGGGCCGCCA CGATATGGAT
AGTCTGGCCG AACGCTATCT GAACCACAAA ACCATTACCT TTGAAGAGAT CGCGGGTAAG
GGGAAAAATC AGCTGACGTT TAATCAGATC GCACTGGAAC AGGCTGGGCC TTATGCGGCC
GAGGATGCGG ACGTCACGCT GCATCTGCAT CAGAAGCTGT GGGGGAAACT GCAACCGCAT
GCCGACCTGT GTCAGGTCTT CCAGACTATC GATATGCCGC TGGTGCCAGT TTTATCCCGC
ATCGAGCGTA CAGGCGTGCT GATCGATCCT GCGATTCTGG CGGAGCACTC AAAAGAGCTG
ACAACCCGTC TGGCGGAGCT GGAAACACAA GCGTATGAAC TGGCGGGCGA AGAGTTCAAT
CTCTCATCGA CCAAGCAGCT ACAGGGTATT CTGTATGAAA AGCAAAAGCT GCCGATTCTG
AAGAAAACGC CAAAAGGCGC ACCGTCAACT AATGAAGAAG TGTTGGCTGA ACTGGCGCTG
GATTACCCTC TGCCGAAGCT GATTCTGGAA TATCGTGGCT TGGCCAAGCT GAAATCTACT
TACACTGACA AGTTACCGCT GATGATCAAT CCGGCGACGA AGCGTGTGCA TACGTCTTAT
CACCAGGCTG TCACTGCGAC CGGGCGTTTG TCTTCCAGCG ATCCTAACCT GCAAAACATC
CCGGTGCGTA ATGACGAAGG GCGCCGTATT CGTCAGGCAT TCATTGCGCC GAAGGGCTAC
AGCATTGTGG CGGCGGACTA CTCGCAAATC GAACTGCGTA TCATGGCGCA CTTATCCGGT
GATAAAGGGC TGTTGAACGC GTTTGCGAAC GGACTGGATA TCCACCGGGC AACGGCGTCA
GAAGTGTTTG GCACTGCGCT GGATAAGGTG ACATCAGAAC AGCGTCGCAG TGCGAAAGCG
ATCAACTTTG GTTTGATCTA CGGCATGAGC GCGTTTGGTC TGTCGCGTCA GTTGAATATT
CCCCGTAGCG AATCGCAGAA ATACATGAAC CTGTATTTTG AGCGCTATCC AGGTGTGCAG
GATTACATGG AACGCACGCG CCAACAGGCC GCGGAACATG GCTATGTGTC TACATTGGAT
GGTCGCCGTC TCTACCTGCC AGACATCCAT TCTCGTAATG CGATGGCGCG TAAAGGTGCG
GAACGTGCGG CGATTAACGC CCCGATGCAG GGCACCGCTG CTGACATTAT TAAGAAAGCG
ATGATCGCGA TTGACGATTG GCTACAGAAA GACGCACCGC AGGTGAAAAT GATCATGCAG
GTTCACGATG AGCTGGTTTT CGAGATCCAT GATTCGGTTA TTGAAGAATC CATTAGTAAA
ATCAAAACAT TAATGGAAGG TTGTATGGAA TTGAATGTCC CGCTGCAGGT TGACATTGGT
ACGGGCATGA ACTGGGATGA AGCACATTAA
 
Protein sequence
MAQIAENPLI LVDGSSYLYR AYHAFPPLTN SAGEATGAMY GVLNMLRSLL LQYQPSHVAV 
VFDAKGKTFR DELFENYKAH RPPMPEDLRE QIEPLHNMVK AMGLPLLAVS GVEADDVIGT
LAVQAEKAGK PVLISTGDKD MAQLVTPSVT LINTMNNSIL GPQEVCDKYG IPPELIIDFL
ALMGDASDNI PGVPGVGEKT AQALLQGLGG LDSLYANLDK IAELSFRGAK TMAPKLEQHK
DVAYLSYQLA TIKTDVELDL SSEQLTVNEP DVDELHRLFS RYEFKRWLSD VESGTWLEGK
KSSQPVPAVS KVVVEQAAEE SNAPALSADG YVTILDEETL LDWIERLKQA EVFAFDTETD
GLDTLTANLI GLSFAIKPGE AAYLPLAHDY LDAPEQLDRA KVLALFKPLL EDEKLLKIGQ
NLKFDKGVMQ RYDIDLRGIA FDTMLESYVL DSVAGRHDMD SLAERYLNHK TITFEEIAGK
GKNQLTFNQI ALEQAGPYAA EDADVTLHLH QKLWGKLQPH ADLCQVFQTI DMPLVPVLSR
IERTGVLIDP AILAEHSKEL TTRLAELETQ AYELAGEEFN LSSTKQLQGI LYEKQKLPIL
KKTPKGAPST NEEVLAELAL DYPLPKLILE YRGLAKLKST YTDKLPLMIN PATKRVHTSY
HQAVTATGRL SSSDPNLQNI PVRNDEGRRI RQAFIAPKGY SIVAADYSQI ELRIMAHLSG
DKGLLNAFAN GLDIHRATAS EVFGTALDKV TSEQRRSAKA INFGLIYGMS AFGLSRQLNI
PRSESQKYMN LYFERYPGVQ DYMERTRQQA AEHGYVSTLD GRRLYLPDIH SRNAMARKGA
ERAAINAPMQ GTAADIIKKA MIAIDDWLQK DAPQVKMIMQ VHDELVFEIH DSVIEESISK
IKTLMEGCME LNVPLQVDIG TGMNWDEAH