| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4216 |
|---|
| Symbol | |
|---|
| ID | 8135215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4766510 |
|---|
| End bp | 4767451 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644867534 |
|---|
| Product | thioesterase domain protein |
|---|
| Protein accession | YP_003019766 |
|---|
| Protein GI | 253690576 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2153] Predicted acyltransferase |
|---|
| TIGRFAM ID | [TIGR02447] thioesterase domain, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCATC TGAGAGTACC TGAAAGCGCA GAAGAACTGG ATGCGTACTA TCAATTCCGC
TGGGAAATGC TGCGTAAACC TCTGCGCCAG CCGTTAGGCT CCGAGCGCGA TGCCTACGAT
GCTCTGGCAC ATCACCAAAC CGTGGTGGAT GAACAGGGAA GGCTGGTCGC GATAGGCCGT
CTTTCCATCA ACGCGGATAA TGAAGCGGCC ATCCGTTTCC TGGCGGTTCA TCCCGACGTG
CGGGGGAAAG GGTTAGGCAC GTTGCTTGCG ATTACTCTGG AGTCCGTGGC GCGTCAGGAA
GGCGTCAAGC GCGTGGTCTG TAGCGCCCGT GAAGACGCAA TGGATTTCTT CTCCAAGCTG
GGTTTTGTTA ACCAGGGCGA AATCACCGCA CCACAAACGA CGCCTGTGCG GCACTTTCTG
ATGATTAAAC CGGTGGCGAC GCTGGATGAT ATTTTGCACC GCCCTGACTG GTGCGGACAG
CTACAACAGG CCTGGTACGA TCACATCCCT TTGAGTGAAA AGATGGGGGT GCGGATAAGC
CAGTACACTG GGAAGAAATT TATCACCACC ATGCCTGAAA CGGGCAACCA AAATCCACAC
CACACGCTTT TTGCCGGCAG CATGTTTTCT CTCGCGACGC TCACCGGTTG GGGGCTAATC
TGGCTGTTGC TGCGTGAACG GCACCTCGGC GGAACGATTA TTCTGGCGGA TGCGCACATT
CGTTACAGCA CGCCAGTGAG TGGCCGACCG AGCGCAGTTG CTGATTTAGG GTCGCTGAGT
GGCGATCTTG ATCGTCTGGC GCGTGGGCGT AAGGCGCGCG TGCAGTTAAA TGTCGAGCTG
TTCGGTGATG ACAATAAAGG GGCGCTATTT GAAGGGGTGT ATATCGTGCT GCCTGCCCAG
CCGGATGCAC CACTGGAAGA AGGCGGTTCG GAAGTCGATT AA
|
|---|
| Protein sequence | MYHLRVPESA EELDAYYQFR WEMLRKPLRQ PLGSERDAYD ALAHHQTVVD EQGRLVAIGR
LSINADNEAA IRFLAVHPDV RGKGLGTLLA ITLESVARQE GVKRVVCSAR EDAMDFFSKL
GFVNQGEITA PQTTPVRHFL MIKPVATLDD ILHRPDWCGQ LQQAWYDHIP LSEKMGVRIS
QYTGKKFITT MPETGNQNPH HTLFAGSMFS LATLTGWGLI WLLLRERHLG GTIILADAHI
RYSTPVSGRP SAVADLGSLS GDLDRLARGR KARVQLNVEL FGDDNKGALF EGVYIVLPAQ
PDAPLEEGGS EVD
|
|---|
| |