| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4208 |
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| Symbol | ligB |
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| ID | 8135207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4755060 |
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| End bp | 4756748 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644867526 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_003019758 |
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| Protein GI | 253690568 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCTCA GGGTTTGCAC ATTTTTGATC ATCATTGTTG GGGGAATCAG CGGTTTTTCG
GCTGTGGCTG GGGTCTGCCC CGATTGGGAT AATACCCGCT CCAAAAAAGA AATTGATGCA
TTACGTCAGC AGTTAGAACA GTGGGATGAC GTGTATTACA CCGAAGGGAA AAGCCCGGTA
GCAGACGATG TTTATGATCA ACTGCGAGAG CAGTTAAACC AGTGGCTAGG CTGTTTTCAG
CCCCAAAGCG TTGCTTCTGT CCGGTTACCC GATCATGGCA AGCAGCTTCA TCCCGTTGCT
CATACGGGAT TGAAGAAATT GTCCGATCGC GAGCAGTTGG TGCAATGGAT CGCTCAGCGT
GAGGATGTAT GGATTCAGCC AAAAATTGAT GGTGTGGCCG TTACGCTGGT CTATCAGCAC
GGCAAGCTCG AATCTGCGGT TAGCCGGGGT AATGGCCTGC AAGGCGAAGA CTGGACGGAA
AAAGTTCGTC TGATTCCAGA AATCCCTCAT TTATTAACCA ATGTACCTTC CTTATTGGTG
CTACAGGGCG AGCTTTTCCT GAAGATGACC GATCATCGCC AGCATATTCA GGGCGGTGTG
AATGCGCGCT CGGTGGTGGC GGGTGAAATG CGCCGTCATC AGCCATCTCC CGTGTTGTCG
CAGATTGGCC TGTTTATCTG GGAATGGCCG GATGGCCCAA AGACGATGCC TGAACGTCTG
GAGAAATTAA CGGAAATGGG GTTTGCCATG ACGGCGGACT ATACCCATGC TATTGGGTCA
TTTGCCGACG CGGAAAAATG GCACCATTAC TGGTATCACA ATCCGCTGCC CTTCGTGACG
GATGGCGTGG TTCTCCGTCA GACTAAAGAG CCGCAGGGGC GCTATTGGCG TAATACATCT
GCCGACTGGG CGATAGCATG GAAATATCCG CCTTTTCATC AGGTTGCGGA AGTCATTGAT
GTTGTATTTT CTGTCGGGCG GACGGGTAAG CTCGCCGTGG TGTTAAAACT TAATCTTCTG
AAACTGGATG ATAAATCGGT CAGCAGGGTG AATGTGGGTT CGCTGTCTCG TTGGAAACAG
TGGGACGTGT TGCCCGGCGA TCGGGTGAGC GTCAGTCTGG CGGGACAGGG GATCCCACGT
CTGGATAACG TGGTATGGCG TAGCACTGAG CGGCTTCCCA TCGTTTCCCC CAGTGAACAT
GATTTCCATG CTTTTAGCTG TTTTCGGTAT AGTACGGTTT GCCAACAGCA ATTTCTGGCG
CGCTTGGTCT GGTTGAGTGG AGAACATGGG TTAAACCTGA CGGGAGTGCG TGACGGAATG
TGGCTGCGCT TGATGCAACA TGGTTTACTG GAAGATGTGC TGTCGTGGTT ATCTCTGACG
GAGGCACAGC TTAATGCGGT CACTGGCATG GGTGATAAAC GGGCGCGAGA TATCTATAAG
AGCTTGCAGT CGGCACGACA GATGCCGTTA TCCCGCTGGC TACTTGCGCT GGGTCTTCCT
GTTCCCCGTT CCGCAATTAG CGCATTGAAT CATGTGAATT GGCTAGCATT ACAGCAATGG
ACAGCACAAC AGTGGCGACA GTTTTCTGGT ATTGGAGAAC GGCGAGCTGA AGAGATTATG
GCATTCCTAA AGCACCCTGC TGTTGTGGAA TTCATTGCCC GCTTAGATGC CGAAGGCATA
CATAGATAA
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| Protein sequence | MWLRVCTFLI IIVGGISGFS AVAGVCPDWD NTRSKKEIDA LRQQLEQWDD VYYTEGKSPV
ADDVYDQLRE QLNQWLGCFQ PQSVASVRLP DHGKQLHPVA HTGLKKLSDR EQLVQWIAQR
EDVWIQPKID GVAVTLVYQH GKLESAVSRG NGLQGEDWTE KVRLIPEIPH LLTNVPSLLV
LQGELFLKMT DHRQHIQGGV NARSVVAGEM RRHQPSPVLS QIGLFIWEWP DGPKTMPERL
EKLTEMGFAM TADYTHAIGS FADAEKWHHY WYHNPLPFVT DGVVLRQTKE PQGRYWRNTS
ADWAIAWKYP PFHQVAEVID VVFSVGRTGK LAVVLKLNLL KLDDKSVSRV NVGSLSRWKQ
WDVLPGDRVS VSLAGQGIPR LDNVVWRSTE RLPIVSPSEH DFHAFSCFRY STVCQQQFLA
RLVWLSGEHG LNLTGVRDGM WLRLMQHGLL EDVLSWLSLT EAQLNAVTGM GDKRARDIYK
SLQSARQMPL SRWLLALGLP VPRSAISALN HVNWLALQQW TAQQWRQFSG IGERRAEEIM
AFLKHPAVVE FIARLDAEGI HR
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