Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4155 |
Symbol | |
ID | 8135153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4687450 |
End bp | 4688772 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644867472 |
Product | xylose isomerase |
Protein accession | YP_003019705 |
Protein GI | 253690515 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGCCT ATTTTGAACA GATCGAAAAA GTCCGTTATG AAGGTAGCCA AAGCGACAAT CCCTTCGCCT TTCGTCACTA CAATCCCGAT CAGGAAATTC TTGGGAAACG GATGGCTGAC CATTTGCGTT TTGCCGTCGC GTATTGGCAC ACGTTCTGCT GGAACGGCGC GGATATGTTC GGCGTCGGAT CTTTTGCTCG GCCGTGGCAA CAGTCAGGCG ACGCGCTGGA GCTAGCGAAG CGCAAGGCGG ACATCGCATT CGAATTCTTT CAAAAGCTGA GCGTGCCTTA CTACTGCTTT CATGACGTCG ATATCGCACC GGAAGGAAAC TCACTGAAAG AGTATCTGCA TAATTTTGCG GTTATCACCG ATGTGCTGGC GGAAAAGCAG CAGGATAGCG GCGTGAAGCT GCTGTGGGGC ACCGCCAACT GCTTTACCCA TCCTCGCTAT GGCGCAGGCG CGGCCACCAA CCCTGACCCA GATGTCTTTG CCTGGGCGGC TACGCAGGTG TTCACGGCAA TGAACGCGAC CAAAAAACTG GGTGGCGAGA ACTATGTGCT GTGGGGCGGG CGCGAAGGGT ATGAAACCCT GCTTAATACC GACCTGCGTC AGGAGCGTGA ACAAATCGGC CGCTTCATGC AGATGGTCGT CGAACATAAA CACAAAATCG GCTTTCAGGG CACGCTGCTC ATCGAGCCGA AGCCACAGGA GCCAACCAAG CACCAGTACG ACTACGATGT CGCCACCGTT TATGGTTTCC TGAAACAGTT TGGGCTGGAA AAAGAGATTA AAGTCAACGT GGAAGCCAAC CACGCTACGC TGGCAGGCCA TTCATTCCAT CATGAAATCG CCACCGCTGT CGCACTGGGC GTATTCGGAT CTGTCGATGC GAACCGCGGC GATCCGCAGC TCGGCTGGGA CACCGATCAG TTCCCTAACA GCGTGGAAGA GAACACGCTG ATCATGTATG AAATTCTCAA GGCGGGTGGC TTCACGACGG GTGGGCTGAA CTTTGACGCA AAAGTTCGTC GCCAAAGCAC CGATCGCTAT GACCTTTTCC ACGCGCATAT CGGCGCGATG GATACAATGG CACTGGCGCT CAAGGCCGCA GCCAGAATGA TTGAAGATGA TAAACTCAAT CAGTTGGTTG CTAAACGCTA TGCAGGCTGG AACGGAGAAC TGGGTCAGCA AATCCTGCAA GGCAAGGCTT CGCTGGAATC ACTTGCCCAC TATGCAGAAA GCCATCAGCT GGCACCACAG CACCAGAGTG GTCAGCAGGA ATTGCTGGAA AACCTGGTTA ACCGCCACCT ATACCCTAAA TAA
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Protein sequence | MQAYFEQIEK VRYEGSQSDN PFAFRHYNPD QEILGKRMAD HLRFAVAYWH TFCWNGADMF GVGSFARPWQ QSGDALELAK RKADIAFEFF QKLSVPYYCF HDVDIAPEGN SLKEYLHNFA VITDVLAEKQ QDSGVKLLWG TANCFTHPRY GAGAATNPDP DVFAWAATQV FTAMNATKKL GGENYVLWGG REGYETLLNT DLRQEREQIG RFMQMVVEHK HKIGFQGTLL IEPKPQEPTK HQYDYDVATV YGFLKQFGLE KEIKVNVEAN HATLAGHSFH HEIATAVALG VFGSVDANRG DPQLGWDTDQ FPNSVEENTL IMYEILKAGG FTTGGLNFDA KVRRQSTDRY DLFHAHIGAM DTMALALKAA ARMIEDDKLN QLVAKRYAGW NGELGQQILQ GKASLESLAH YAESHQLAPQ HQSGQQELLE NLVNRHLYPK
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