Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4154 |
Symbol | xylF |
ID | 8135152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4686095 |
End bp | 4687093 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644867471 |
Product | D-xylose transporter subunit XylF |
Protein accession | YP_003019704 |
Protein GI | 253690514 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATGAAAG TTAAACATTT TTTACTCTCA GCTTGTGCCG TATTCACTTT AGCTTGTCAG CCCGGATTCG CGAAGGACGT TAAAATAGGC ATGGCGATTG ACGATCTACG TCTTGAACGC TGGCAGAAAG ATCGCGATCT TTTTGTTGAG CAAGCCAAAA AGCAGGGTGC TGATGTGTTT GTTCAATCAG CAAACGGCAA TGAGGCCACG CAGATTTCTC AAATAGAAAA CATGATCAAT CGCGGTGTCG ATGTCTTGGT TATTATTCCT TATAACGGTC AAGTGCTTGG CAATGTTATT GCGGAAGCAA AACGTGAGGG AATAAAAGTG CTTGCTTATG ACCGCATGAT TAATAATGCG GATGTGGATT TTTATATTTC ATTTGATAAT GAAAAGGTTG GTGAGCTACA GGCGAAATAT CTCGTCGATA AAGTGCCCGG CGGAAACTAT TTCTTAATGG GCGGCTCACC TGTTGATAAT AACGCGAAGC TGTTTCGTCA GGGGCAAATG AAAGTGCTCA CGCCGCTGAT CGAAAATGGG AAAATAAAAG TGGTCGGCGA TCAATGGGTT GATGCCTGGT TACCAGAAAA TGCGCTGAAA ATTATGGAAA ATGCGCTAAC GGCGAACAGC AATAAGATTG ATGCTGTTGT CGCATCGAAC GATGCTACGG CGGGCGGGGC GATTCAGGCG CTTGCCGCAC AGGGACTGGC TGGGAAAGTC GCCATTTCCG GTCAGGATGC CGATCTGGCC GCAATCAAAC GTATTGTGGC AGGCACGCAA ACCATGACGG TCTATAAACC GATCAGCAAG CTGGCCAAAG ATGCCGCAGA TATCGCTGTG GCGCTGGGCT CCGGCAAAAC GCCGGAGTCT AATGCTAAAT TAAACAATGG GTTGAAAGAT ATCCCTTCCT TCTTACTGAC GCCGATTCCC GTCGATAAAT CCAATATCGA TACCACCGTC ATTGCCGATG GCTTCCACAA AAAAGCGGAC GTGTATTAA
|
Protein sequence | MMKVKHFLLS ACAVFTLACQ PGFAKDVKIG MAIDDLRLER WQKDRDLFVE QAKKQGADVF VQSANGNEAT QISQIENMIN RGVDVLVIIP YNGQVLGNVI AEAKREGIKV LAYDRMINNA DVDFYISFDN EKVGELQAKY LVDKVPGGNY FLMGGSPVDN NAKLFRQGQM KVLTPLIENG KIKVVGDQWV DAWLPENALK IMENALTANS NKIDAVVASN DATAGGAIQA LAAQGLAGKV AISGQDADLA AIKRIVAGTQ TMTVYKPISK LAKDAADIAV ALGSGKTPES NAKLNNGLKD IPSFLLTPIP VDKSNIDTTV IADGFHKKAD VY
|
| |