Gene PC1_4154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4154 
SymbolxylF 
ID8135152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4686095 
End bp4687093 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content47% 
IMG OID644867471 
ProductD-xylose transporter subunit XylF 
Protein accessionYP_003019704 
Protein GI253690514 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4213] ABC-type xylose transport system, periplasmic component 
TIGRFAM ID[TIGR02634] D-xylose ABC transporter, substrate-binding protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAG TTAAACATTT TTTACTCTCA GCTTGTGCCG TATTCACTTT AGCTTGTCAG 
CCCGGATTCG CGAAGGACGT TAAAATAGGC ATGGCGATTG ACGATCTACG TCTTGAACGC
TGGCAGAAAG ATCGCGATCT TTTTGTTGAG CAAGCCAAAA AGCAGGGTGC TGATGTGTTT
GTTCAATCAG CAAACGGCAA TGAGGCCACG CAGATTTCTC AAATAGAAAA CATGATCAAT
CGCGGTGTCG ATGTCTTGGT TATTATTCCT TATAACGGTC AAGTGCTTGG CAATGTTATT
GCGGAAGCAA AACGTGAGGG AATAAAAGTG CTTGCTTATG ACCGCATGAT TAATAATGCG
GATGTGGATT TTTATATTTC ATTTGATAAT GAAAAGGTTG GTGAGCTACA GGCGAAATAT
CTCGTCGATA AAGTGCCCGG CGGAAACTAT TTCTTAATGG GCGGCTCACC TGTTGATAAT
AACGCGAAGC TGTTTCGTCA GGGGCAAATG AAAGTGCTCA CGCCGCTGAT CGAAAATGGG
AAAATAAAAG TGGTCGGCGA TCAATGGGTT GATGCCTGGT TACCAGAAAA TGCGCTGAAA
ATTATGGAAA ATGCGCTAAC GGCGAACAGC AATAAGATTG ATGCTGTTGT CGCATCGAAC
GATGCTACGG CGGGCGGGGC GATTCAGGCG CTTGCCGCAC AGGGACTGGC TGGGAAAGTC
GCCATTTCCG GTCAGGATGC CGATCTGGCC GCAATCAAAC GTATTGTGGC AGGCACGCAA
ACCATGACGG TCTATAAACC GATCAGCAAG CTGGCCAAAG ATGCCGCAGA TATCGCTGTG
GCGCTGGGCT CCGGCAAAAC GCCGGAGTCT AATGCTAAAT TAAACAATGG GTTGAAAGAT
ATCCCTTCCT TCTTACTGAC GCCGATTCCC GTCGATAAAT CCAATATCGA TACCACCGTC
ATTGCCGATG GCTTCCACAA AAAAGCGGAC GTGTATTAA
 
Protein sequence
MMKVKHFLLS ACAVFTLACQ PGFAKDVKIG MAIDDLRLER WQKDRDLFVE QAKKQGADVF 
VQSANGNEAT QISQIENMIN RGVDVLVIIP YNGQVLGNVI AEAKREGIKV LAYDRMINNA
DVDFYISFDN EKVGELQAKY LVDKVPGGNY FLMGGSPVDN NAKLFRQGQM KVLTPLIENG
KIKVVGDQWV DAWLPENALK IMENALTANS NKIDAVVASN DATAGGAIQA LAAQGLAGKV
AISGQDADLA AIKRIVAGTQ TMTVYKPISK LAKDAADIAV ALGSGKTPES NAKLNNGLKD
IPSFLLTPIP VDKSNIDTTV IADGFHKKAD VY