| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4110 |
|---|
| Symbol | |
|---|
| ID | 8135108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4644654 |
|---|
| End bp | 4645574 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644867428 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003019661 |
|---|
| Protein GI | 253690471 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.583843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCTT ATATCGTCCG ACGTTTGCTG GAAATGATCC CGGTTCTGCT GGTGGTCTCC
CTGTTAGTGT TCGGTTTTAT CAAGCTGTTG CCGGGTGACC CGGCACGTAT TTACGCGGGT
GCTGATGCGA CGATTGAGGC GGTGGAAGCC GCCCGTCAGC AGTTAGGCTT GAATGACCCG
CTGCCGCAGC AGTATGTCCA CTGGCTCGGC GGCCTGTTCA GCGGCGATCT GGGTGTGACG
TACCGCACCC AGCAGCCGGT CATCGACGTC ATCAGCAAGA GCTTTATGCC TACCATGTGG
CTGGCGCTGG CGGGCTTCGT CTGGTCGGTG CTGCTCGGTC TGCTGATTGG CGTGGTATCC
GCGCTCAAGC GGGGCAAATG GCAGGACTGG ACGCTGATGA GCTTCGCGGT TGGCGGAATT
TCCATGCCAC CGTTCTGGCT CGGCCTGCTG CTGATTCAGT TTGTGGCCAT GCCGTTCGGC
GTCTTTTCCG TCAGCGGTTT TAATCAGCCC AGCGACATCA TTCTGCCCGC GCTGACGCTC
GGAGCCTCGG TAGCCGCCGT CATGGCGCGC TTTACCCGCT CCGCGTTTCT GGAAGTCGCA
CAGGAAGACT ACGTGCGCAC CGCGCGATCC AAAGGGCTAC GCAATCGGCT GGTCACCTGG
AAGCATGTGA TGCGTAACGC GCTGATTCCG GTCATCACCA TGCTGGGGCT GCAATTCGGC
TTCCTGCTCG GTGGCTCCAT CGTGGTCGAA AGCGTATTTA GCTGGCCGGG ATTGGGCTGG
CTGCTGATTG AATCGATCAA GACGCAGGAT CAGCCGGTCA TTCAGGCGCT GGTCATGCTG
TTCGTGTTTG AATTTATTGT CATTAACCTG TTGGTGGACC TGCTGTACGC GGTGGTCAAT
CCGGCGATTC GCCTACGTTA G
|
|---|
| Protein sequence | MFAYIVRRLL EMIPVLLVVS LLVFGFIKLL PGDPARIYAG ADATIEAVEA ARQQLGLNDP
LPQQYVHWLG GLFSGDLGVT YRTQQPVIDV ISKSFMPTMW LALAGFVWSV LLGLLIGVVS
ALKRGKWQDW TLMSFAVGGI SMPPFWLGLL LIQFVAMPFG VFSVSGFNQP SDIILPALTL
GASVAAVMAR FTRSAFLEVA QEDYVRTARS KGLRNRLVTW KHVMRNALIP VITMLGLQFG
FLLGGSIVVE SVFSWPGLGW LLIESIKTQD QPVIQALVML FVFEFIVINL LVDLLYAVVN
PAIRLR
|
|---|
| |