Gene PC1_4107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4107 
Symbol 
ID8135105 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4640121 
End bp4641089 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content58% 
IMG OID644867425 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_003019658 
Protein GI253690468 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.130678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCGGC ATATGCAAAT TGAAACTGTC AATCTGCCAC TAGCCCGTCC TATGGCGGCT 
GAAAACGGTA CGCGTCGCGC GGTTACCGTT ATCCGCGTCG CGTTGGAAGA AAAAGGATTT 
ATTGGGCAAG GCGAATGTAC GCCGCTCGCC CATTATGGCG AGTCCGCCGA CAGCGTATGT 
CACCAGCTCT CTGCGATCCG TGAGGCAATC GAACACGGCC TGACCATCGA ACAACTCCAG 
AAAGACTTAG CGCCGGGCGC AGCCAGAAAT GCATTGGACT GCGCGCTGTG GCGGCTCAAT 
ACCGCATTGG AAAAACAGAC GCTGTGGCAG CGCCTCGATA TTCATCCCCC CACGTCCGTG 
GTCTGTGCGC AAACGTTGGC GCTCGACAGC GTGGAGAAAA TGGCCGCCGC CGCATCCAAT 
GCTGTTTCCC ACGGCGCGCT GCTGCTGAAA ATTAAACTGG ATCGCGAACT GATTCTGGAG 
AAGGTCGCCG CCATTCGTGC CGCCGCGCCC AACGCCAGAT TGATTATCGA CGCGAGAGCG 
AGCTGGAGCG GGCTGGATTT ACATAGCCTG TCCACGGCGC TGCTGCCCTA TCAGGTCGCC 
ATGATTGAGC AACCACTGCC TGTCGGTAAA GACGAGGATT TACAGCGTTT TGCCCACCCG 
ATTCCTATCT GCGCGGATGA AAGCTGCCGC CACAGCGGTG ACATCGTCGG GCTGCGTCGT 
CGTTACGACA TGATCAACAT CAAGCTGGAT AAGTGTGGCG GGCTGACCGA AGCACTGGCG 
ATGGTGCGTG AGGCTCACTT TCACGGCCTG CGCATTATGG TCGGCTGTAC GCTGGGCTCA 
TCGATGGCGA TGGAAGCCGC CCTGCCCGTC GCCGCCGATG CCGAACATGT CGATCTCGAT 
GGTCCTATCT GGCTGGCCGC CGACAGCTCG CCTTATCTGA CCTATAACCT TGGCCGAATC 
TGGCTATGA
 
Protein sequence
MMRHMQIETV NLPLARPMAA ENGTRRAVTV IRVALEEKGF IGQGECTPLA HYGESADSVC 
HQLSAIREAI EHGLTIEQLQ KDLAPGAARN ALDCALWRLN TALEKQTLWQ RLDIHPPTSV 
VCAQTLALDS VEKMAAAASN AVSHGALLLK IKLDRELILE KVAAIRAAAP NARLIIDARA 
SWSGLDLHSL STALLPYQVA MIEQPLPVGK DEDLQRFAHP IPICADESCR HSGDIVGLRR 
RYDMINIKLD KCGGLTEALA MVREAHFHGL RIMVGCTLGS SMAMEAALPV AADAEHVDLD 
GPIWLAADSS PYLTYNLGRI WL