Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4106 |
Symbol | rph |
ID | 8135104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4639162 |
End bp | 4639878 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644867424 |
Product | ribonuclease PH |
Protein accession | YP_003019657 |
Protein GI | 253690467 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0374298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCCCAA CAGGCCGAAG TGCACAGCAA GTACGCCCCC TTAAATTGAC CCGTCATTAC ACGAAACACG CCGAAGGTTC CGTTTTAGTC GAATTTGGCG ACACCAAAGT GTTATGCAAT GCCACGGTAG AAGAGGGTGT TCCGCGCTTT CTGAAAGGCC AGGGGCAAGG ATGGGTTACC GCCGAATACG GCATGCTGCC GCGCGCGACG CACAGCCGTA ACGCCCGTGA AGCCGCTAAA GGCAAGCAGG GCGGGCGGAC GCTGGAGATT CAGCGCCTGA TTGCGCGCTC CCTGCGTGCA GCTATCGACC TGAAAGTGCT CGGCGAATAC ACCATTACGC TCGACTGCGA TGTATTGCAG GCGGACGGCG GTACGCGTAC GGCGTCCATC ACCGGTGCCT GCGTGGCGCT GGCCGATGCG CTGAACCAGA TGGTGGCCAA CGGCAAGCTG AAAAAGAACC CGATGAAAGG CATGGTCGCG GCGGTTTCCG TCGGCATCGT GAACGGCGAA GCGTTGTGCG ATCTGGAATA TGTGGAAGAT TCCGCCGCTG AGACCGACAT GAATGTGGTC ATGACCGAAG ACGGTCGCAT GATTGAAGTG CAGGGGACCG CCGAAGGCGA ACCGTTCAGC CATGAAGAAT TACTCTCCCT GCTGGCGTTA GCCCGAGGGG GAATCGAGAC CATCGTTCAG GCGCAGAAAG CCGCCTTAAT CGATTGA
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Protein sequence | MRPTGRSAQQ VRPLKLTRHY TKHAEGSVLV EFGDTKVLCN ATVEEGVPRF LKGQGQGWVT AEYGMLPRAT HSRNAREAAK GKQGGRTLEI QRLIARSLRA AIDLKVLGEY TITLDCDVLQ ADGGTRTASI TGACVALADA LNQMVANGKL KKNPMKGMVA AVSVGIVNGE ALCDLEYVED SAAETDMNVV MTEDGRMIEV QGTAEGEPFS HEELLSLLAL ARGGIETIVQ AQKAALID
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