Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4105 |
Symbol | pyrE |
ID | 8135103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4638315 |
End bp | 4638956 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644867423 |
Product | orotate phosphoribosyltransferase |
Protein accession | YP_003019656 |
Protein GI | 253690466 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0461] Orotate phosphoribosyltransferase |
TIGRFAM ID | [TIGR00336] orotate phosphoribosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00891654 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCCT ACCAGCGCCA GTTTATTGAG TTTGCACTCA GCAAGCAGGT ATTGAAGTTC GGCGAATTTA CCCTGAAATC CGGGCGCATC AGCCCCTATT TCTTCAATGC CGGGCTGTTT AATACCGGGC GCGATCTGGC CTTACTGGGG CGTTTTTATG CGGAAGCGCT GGTTGATTCC GGTGTAGAGT TCGACCTGCT GTTCGGGCCG GCTTACAAAG GCATTCCGAT TGCTACCACT GCGGCGGTAG CGCTGGCAGA ACATCACGAT CGCGACCTGC CATACTGCTT TAACCGCAAA GAAGCCAAAG ATCACGGCGA GGGCGGCAGT CTGGTCGGCA GCCCGTTACA GGGCCGCGTG ATGCTGGTGG ACGACGTGAT TACGGCGGGG ACGGCGATTC GCGAATCGAT GGCAATCATC AGCGCACATG GGGCAACGCT GGCGGGGGTA ATGATTGCGC TGGATCGTCA GGAACGCGGT CGTGCCGACT TGTCTGCGAT TCAGGAAGTG GAACGCGACT ATCAGTGCAA GGTGATTTCG ATTATTACGC TGAAGGAGCT GATTGCCTAT CTGGCGGAAA AACCAGAGAT GGCGGCGCAT CTGGATGCGG TGAAAGCCTA TCGTGAGCAG TTCGGGGTTT AA
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Protein sequence | MKAYQRQFIE FALSKQVLKF GEFTLKSGRI SPYFFNAGLF NTGRDLALLG RFYAEALVDS GVEFDLLFGP AYKGIPIATT AAVALAEHHD RDLPYCFNRK EAKDHGEGGS LVGSPLQGRV MLVDDVITAG TAIRESMAII SAHGATLAGV MIALDRQERG RADLSAIQEV ERDYQCKVIS IITLKELIAY LAEKPEMAAH LDAVKAYREQ FGV
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