Gene PC1_4092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4092 
Symbol 
ID8135090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4628037 
End bp4629284 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content48% 
IMG OID644867410 
ProductO-antigen polymerase 
Protein accessionYP_003019643 
Protein GI253690453 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTTG ATTTTTTGCC CGCATGCTTT ACGGACGCCG ATAAGAGAAA TTTCCCCACG 
ATTACCGCCT TCCTGCTTGG GCTTTCTCTG CCGCTTTCTA ATCAACTGTT GAAAGTCGCG
TTGGTCCTGG CGCTCATCTG CGTCTTGAAA TACCGGGATA TGAAGTATTG GCGTCAGATG
ATTATTCATC CGATGGTGAT CCTCCCTGCG TTGATGATCG GCTTATTAGC GCTATCCCTG
CTCACTCATC ATCATGAGGC AGGGCCGGAG ATGGTCGAAA AATATAAGAA GCTGCTGTAC
ATCCTGCCTC TTGCTTTATT CTTTGTGCTC CAATCAGCAC AGAGCAAGGC GTTATTCAAC
GGCTTTCTCT TGGGAAATGG TATTGTCCTT GCACTGAGTA TCGCTGGCGG TTTGTTTCAT
CTATTTCCTG GGCATATCGA CCCTGCGAAC CCGACCGTTT TTAAGCTACA GATTACTCAA
AACTTTTTTA TGGCCATGGC CGTATTTCTC TGGCTTGAGC GAGCCAGAAT CAGCCAGGGA
TCTGGACGAA TCGGTTACCT GCTATTAGCA CTAGTCGCTT GCTGCAACAT ACTGTTTATG
GTGCAAGGTA GAATCGGATA CATCGCCCTT ATTGCAGGTA TTGGCGCTTG GGCATTGCTC
TCTCTGAAAC CGCGTCAGGC CCTGCTCGCC CTAGGTTCTG GCATTGTCGT CATTGGCCTG
TTGTTTACGA TTCCTAACCG CGCAGCCGAA CGCATTACAC TTGGTGTCCA CGAAATACAA
AACTGTCTAC AGCAAAAAAC GGGCGATGCT TATTCTGCTT GTGATAGCTC AATGGGGCAA
CGCACCGCAT TTATTTTACA GGCTGCGCAA TTAATTGAGC AGGCTCCGCT GTTGGGCAAC
GGCGCAGGAA GTTTCTGGTA TCACAACCCT GAGACAGGTT ACAGCGTAAA TAACCCACAC
AACCAGTATT TACTGGAAAC GATACAGAAT GGTGCCGTCG GCCTTGCCAT ATTCCTTTTA
TGGATGGCCA GTTTTGCTAT CGCCGCATGG AACCAGCCAC CTCGAGAGAA AAGCATTTTT
GTTACGCTTC TGGTCATTTA TTTAAGTGGT AATCTCTTTA ACTCATTCCT GTTGGACTCA
ACCGAAGGCC ACCTGTTTGT GATTCTGACC GCACTCCTGC TGGCAAAGCA TATTCCACTG
CTGAAGCGCA ATAAAAACGC AGCGCCACAG CAAGGCGCAG CTTCATAA
 
Protein sequence
MKLDFLPACF TDADKRNFPT ITAFLLGLSL PLSNQLLKVA LVLALICVLK YRDMKYWRQM 
IIHPMVILPA LMIGLLALSL LTHHHEAGPE MVEKYKKLLY ILPLALFFVL QSAQSKALFN
GFLLGNGIVL ALSIAGGLFH LFPGHIDPAN PTVFKLQITQ NFFMAMAVFL WLERARISQG
SGRIGYLLLA LVACCNILFM VQGRIGYIAL IAGIGAWALL SLKPRQALLA LGSGIVVIGL
LFTIPNRAAE RITLGVHEIQ NCLQQKTGDA YSACDSSMGQ RTAFILQAAQ LIEQAPLLGN
GAGSFWYHNP ETGYSVNNPH NQYLLETIQN GAVGLAIFLL WMASFAIAAW NQPPREKSIF
VTLLVIYLSG NLFNSFLLDS TEGHLFVILT ALLLAKHIPL LKRNKNAAPQ QGAAS