Gene PC1_4069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4069 
Symbol 
ID8135067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4602288 
End bp4602965 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content50% 
IMG OID644867387 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_003019620 
Protein GI253690430 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACTA TTCGGCTATT CTCTCTACTC GATCATCTTC GCGGCCGTGT GCACCCGGTA 
TCAGCGGAAA TATTAGCCCA AGCGTTGAAT GTATCAGTCA GAACGATCTA CAGAGATATG 
GCGGCGCTAC AAACCATCGG CGCCCCGATT CGCGGAGAAT CGGGGCTCGG TTACCTACTT 
GAAAAAGACT ACTTCCTGCC CCCGCTGAAT TTTGATCCAG ATGAGCTGGA CGCCATTATG 
CTGGGAATGC GGCTGATAGG TGCCCGAGGC GATGACATGC TTTCCGCAGC AGCCAGACGG 
GTTTCAGCAA AAATCAGCGC CGTGATTGAT GTCAAAAAAT CTGATAGCTA TAAGTCGCTT 
CCTCTCAGAG CGGTTTCCCG ACATACCGAG GAAAGTGAGA AAGCCATAAA ACACCTGGCT 
TTTATTCGCC TTGCTATCCG TAACAAGCTT CAACTACGTA TTGCCTATGT TGATCTGCAA 
GGCAGAGAGA GCGATAGAAT CGCTCGTCCT CTCGGGTTAA CCCTGTTTGA TGCCGTGTGG 
TTACTCACGA TATGGTGTGA AACTCGCTCA GACTTTCGCA ATCTAAGGGT CGATAACATC 
ACTTCCGTGG CGGAGACCGG CCTATACTTC AGACCAGAGA AAGGGAAACG CTTCGAAGAC 
TATCTCAATA CGCTGTAG
 
Protein sequence
MKTIRLFSLL DHLRGRVHPV SAEILAQALN VSVRTIYRDM AALQTIGAPI RGESGLGYLL 
EKDYFLPPLN FDPDELDAIM LGMRLIGARG DDMLSAAARR VSAKISAVID VKKSDSYKSL 
PLRAVSRHTE ESEKAIKHLA FIRLAIRNKL QLRIAYVDLQ GRESDRIARP LGLTLFDAVW 
LLTIWCETRS DFRNLRVDNI TSVAETGLYF RPEKGKRFED YLNTL