| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4054 |
|---|
| Symbol | ubiB |
|---|
| ID | 8135052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4583293 |
|---|
| End bp | 4584933 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644867372 |
|---|
| Product | putative ubiquinone biosynthesis protein UbiB |
|---|
| Protein accession | YP_003019605 |
|---|
| Protein GI | 253690415 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0661] Predicted unusual protein kinase |
|---|
| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCCA GTGAATTACG CCGCCTTTAC AGCATTGTGC GTGTGCTGTT GAGCTATGGT
CTGGACGAAC TCATTCCTAA AATGCGTCTG ACGTTTCCGC TGCGTGCGGG GCGCCGTCTG
CTGTTCTGGT TACCCAATCG TCACCGCAAC ATGCCTTTAG GGGAACGTCT ACGTTTGGCA
CTCCAGGAAC TGGGGCCTGT GTGGATTAAG TTCGGACAAA TGATGTCTAC GCGCCGCGAT
CTCTTCCCAC CGGCTATCGC CGACCAGTTG GCGATGTTGC AGGATAAGGT TGAGCCGTTT
GATGGCAAAC TGGCTCGCGA GCAAATTGAG CTGTCGATGG GGGGGATTCC TCTCGAAGAG
TGGTTTGATG ATTTTGACAT TAAACCGCTG GCTTCTGCCT CAATTGCACA GGTGCATACC
GCCTGTCTGA AAAGCACGGG AAAAGAGATC GTTATCAAGG TTATCCGCCC GGATATCTTG
CCTGTCATCA AGGCGGATAT GCGCCTGATG AAGCGCCTGG CTGGCTGGTT GCCTCGTCTG
TTGCCGGATG GTCGTCGCCT GCGGCCGCGT GAAGTGGTGC TGGAATACGA AAAAACGTTG
CTTGATGAGC TGAATTTGCT GCGAGAAGCA GCCAATGCCA TTCAGCTGCG GCGGAATTTC
GAGAACAGCC CGATGCTGTA TGTGCCGGAA ATCTATTCGG ATTATTGCAG CGAAGGCATG
TTGGTGATGG AACGCATCTA CGGTATTCCT GTTTCTGATG TCGATGCGCT GAAGGCCAAT
GGCACAGATA TGAAGCTGCT GGCAGAACGC GGCGTTCAGG TTTTCTTCAC GCAGGTATTT
CGTGACAGTT TCTTCCATGC GGATATGCAT CCCGGCAATA TCTTTATCAG CTACGAGCAC
CCGGAAGACC CCCAATATAT CGGCATTGAC TGCGGGATCG TCGGTTCGTT GAATAAAGAA
GATAAGCGCT ATCTGGCCGA GAATTTCATC GCCTTCTTCA ACCGTGATTA TCGTAAAGTC
GCCGAACTGC ATGTGGACTC GGGCTGGGTG CCTGCGGATA CCAATGTCGC TGATTTTGAA
TTCGCTATTC GTACGGTTTG TGAACCGATC TTCGAGAAGC CGTTGGCGGA AATTTCGTTC
GGCCATGTAT TATTGAATTT GTTTAATACG GCACGCCGCT TCAACATGGA AGTACAGCCC
CAATTGGTGT TGCTGCAAAA AACGCTGTTG TATATTGAAG GCGTTGGTCG GCAGCTTTAT
CCGCAGCTCG ATCTGTGGAA AACCGCCAAG CCGTTTCTGG AAACCTGGAT GAAGCGGCAG
GTCGGTTTAC CTGCGGTTTT CCGTGCGCTC AAAGAAAAAG CGCCGTTCTG GGCTGAAAAA
CTGCCGGAAG TGCCTGAATT GTTTTATGAC GGGCTGCGTC AGCATAAGAT GTTAAAGCAC
AGCGTCGACC AACTGGCCTA TGAGTTGAAA ACGCAGCAGG CGCGTCAAGG ACAATCACGA
TATCTTTTGG GTATTGGCGC AACGCTGCTA ATCAGTGGTA CGTTGTTACT GATCAGCCGT
GTTGAAGCCG ATATGGTTCC CGCAGGGCTG ATGGCAGCAG GAATTGTTAC CTGGATTATC
GGTTGGCGTC GAACTCGTTG A
|
|---|
| Protein sequence | MTPSELRRLY SIVRVLLSYG LDELIPKMRL TFPLRAGRRL LFWLPNRHRN MPLGERLRLA
LQELGPVWIK FGQMMSTRRD LFPPAIADQL AMLQDKVEPF DGKLAREQIE LSMGGIPLEE
WFDDFDIKPL ASASIAQVHT ACLKSTGKEI VIKVIRPDIL PVIKADMRLM KRLAGWLPRL
LPDGRRLRPR EVVLEYEKTL LDELNLLREA ANAIQLRRNF ENSPMLYVPE IYSDYCSEGM
LVMERIYGIP VSDVDALKAN GTDMKLLAER GVQVFFTQVF RDSFFHADMH PGNIFISYEH
PEDPQYIGID CGIVGSLNKE DKRYLAENFI AFFNRDYRKV AELHVDSGWV PADTNVADFE
FAIRTVCEPI FEKPLAEISF GHVLLNLFNT ARRFNMEVQP QLVLLQKTLL YIEGVGRQLY
PQLDLWKTAK PFLETWMKRQ VGLPAVFRAL KEKAPFWAEK LPEVPELFYD GLRQHKMLKH
SVDQLAYELK TQQARQGQSR YLLGIGATLL ISGTLLLISR VEADMVPAGL MAAGIVTWII
GWRRTR
|
|---|
| |