Gene PC1_4048 details

Gene Information

• Locus tag: PC1_4048
• Symbol: rfaH
• ID: 8135046
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 4579121
• End bp: 4579609
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644867366
• Product: transcriptional activator RfaH
• Protein accession: YP_003019599
• Protein GI: 253690409
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator
• TIGRFAM ID: [TIGR01955] transcriptional activator RfaH

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGCCT GGTACTTACT GTATTGTAAA CGTGGTCAAC TGCTGCGCGC GAAAGAACAT 
CTGGAACGTC AGGATGTGAC CTGCGTGAGC CCGATGATCA CGCTGGATAA AATCGTTCGT 
GGTAAACGAA CGGAAGTGTG TGAGCCGCTG TTCCCAAACT ACCTGTTTGT GGAATTCGAT 
CCCGAACGTA TCCACACCAC CACCATCAGC GCAACACGCG GGGTGAGCAA TTTCGTGCGA 
TTTGGCGCAC TGCCCGCGAC CATTCCGCAG CAGGTTATCG ATGAGTTGTC ACTTCGTCCC 
TTGCAGGTCA TCACTGATCC GCTGACGCCG CAGCCCGGCG ATAGCGTGGT CATTACCGAC 
GGTATTTTCT CTGGTCTTCA GGCGATTTAC ACCGAACCTG ATGGCGAAGC TCGGTCGATG 
CTGTTGCTGA ATATGTTGAA CAAGCAGGTC AGGCAGAGTA TCGATAACCG CGAGTTTCGC 
AAAGCCTAG 

 

Protein sequence

MEAWYLLYCK RGQLLRAKEH LERQDVTCVS PMITLDKIVR GKRTEVCEPL FPNYLFVEFD 
PERIHTTTIS ATRGVSNFVR FGALPATIPQ QVIDELSLRP LQVITDPLTP QPGDSVVITD 
GIFSGLQAIY TEPDGEARSM LLLNMLNKQV RQSIDNREFR KA