Gene PC1_4038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4038 
Symbol 
ID8135029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4560142 
End bp4561662 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content49% 
IMG OID644867349 
ProductABC transporter related 
Protein accessionYP_003019589 
Protein GI253690399 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACGA CACGGTTGTT AGATATTCGG GGCATGAGCG TTGAGTTTCC GGGGGTAAAA 
GCATTAGATC AGGTGGACTT CACGCTTAAT CGCGGCGAAA TAGTGGCGCT ATTAGGGGAG
AATGGTGCAG GGAAATCAAC CTTAATTAAG GCGTTGACTG GCGTTTATCA CCGTTCGTCT
GGTGATATTA TCCTCGATGG TCTGGCGATT AATCCTGTTA ATACTGCCCA CGCTCAGTCA
TTGGGGATTG GCACGGTATA TCAGGAGGTC AATCTATTAC CGAATCTGTC CGTTGCGGCA
AATCTATTTA TTGGTCGTGA ACCCACCCGC TGGGGCATCG TTGATCAACA TAAAATTCTG
CGTCAGGCTG AAGCACTTTT ATTGAATTAT GGGCTGGTGA TTGATGTTAG CCATCCGCTT
GGTAATTACT CCATTGCAGT ACAGCAAATT GTCGCTATTG CCAGAGCTAT TGATCTTTCC
GCTAAAGTCT TAATTCTTGA TGAGCCCACC GCAAGCCTTG ATGCAAAAGA AGTTGATATG
CTGCTGGATA TATTGCGGAA ATTGCGCGAT CGCGGCATTG GCATGATATT CGTCACGCAC
TTTCTGGATC AGGTTTATCG CATTAGCGAC AGAATTACCG TTTTACGTAA TGGTCGACTC
GTGGGGACAT TACCGGTTGA AGAATTACCG CGTATTGAAT TAGTCCAAAT GATGCTGGGA
CACAGTTTTG ATGAAACGTT ATTGAAGCGG AGTGAACACA GTGACGTGGC GGGTGAACCC
ATCGTGCAAT TTAAACACTA TGGTCGGCGT GGTTCGATTA ATGACTTCGA GCTTTCCGTG
CGTCCAGGAG AAATTGTTGG ACTTGCTGGT CTACTGGGTT CCGGTCGGAC AGAAACCGCG
CAGCTGATAT TTGGTATTAA CGTGCCTGAT GCCGGAGAAG CCAGAGTTGA TGGCAAACAA
GTCAGCATTC GTACGCCGCG TGCAGCAGGG AAACTGGGCT TTGGTTATTG CCCTGAGGAT
CGCAAGACTG ACGGCATTGT CGGTGCGGCA ACGGTACGAG AGAACATCAT TCTGGCGCTT
CAGGCGCAGC GCGGCTGGTT GAAGCCTATT TCCTTGCGTG AACAAACTCG TATCGCTGAA
AAATTTATCA ACCTATTAGG GATTCGTACG CCCAGCCCAG AGCAGGAAAT TCAGTATCTA
TCGGGTGGGA ATCAGCAAAA AGTCCTGCTA TCGCGCTGGC TGGCAACAGA GCCGCGCTTT
TTGATTCTGG ATGAGCCAAC GAGAGGGATT GATGTTGGTG CACATGCTGA AATCATTCGT
CTTATCGAGA AGCTGTGTGA ACAGGGAATG GCGTTACTTG TTATTTCTTC TGAGCTGGAA
GAACTGACAG GCTATGCCGA TCGCATCATC GTACTACGTG ACAGGCAACA CGTTGCACAT
CTCGAACATA GCGAGATCTC GGTTGCCGCA GTGATGCAGG CTATCGCAGT ACAAACGGGA
GCAGCCGATG ACAGACAATA A
 
Protein sequence
METTRLLDIR GMSVEFPGVK ALDQVDFTLN RGEIVALLGE NGAGKSTLIK ALTGVYHRSS 
GDIILDGLAI NPVNTAHAQS LGIGTVYQEV NLLPNLSVAA NLFIGREPTR WGIVDQHKIL
RQAEALLLNY GLVIDVSHPL GNYSIAVQQI VAIARAIDLS AKVLILDEPT ASLDAKEVDM
LLDILRKLRD RGIGMIFVTH FLDQVYRISD RITVLRNGRL VGTLPVEELP RIELVQMMLG
HSFDETLLKR SEHSDVAGEP IVQFKHYGRR GSINDFELSV RPGEIVGLAG LLGSGRTETA
QLIFGINVPD AGEARVDGKQ VSIRTPRAAG KLGFGYCPED RKTDGIVGAA TVRENIILAL
QAQRGWLKPI SLREQTRIAE KFINLLGIRT PSPEQEIQYL SGGNQQKVLL SRWLATEPRF
LILDEPTRGI DVGAHAEIIR LIEKLCEQGM ALLVISSELE ELTGYADRII VLRDRQHVAH
LEHSEISVAA VMQAIAVQTG AADDRQ