Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4038 |
Symbol | |
ID | 8135029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4560142 |
End bp | 4561662 |
Gene Length | 1521 bp |
Protein Length | 506 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644867349 |
Product | ABC transporter related |
Protein accession | YP_003019589 |
Protein GI | 253690399 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAACGA CACGGTTGTT AGATATTCGG GGCATGAGCG TTGAGTTTCC GGGGGTAAAA GCATTAGATC AGGTGGACTT CACGCTTAAT CGCGGCGAAA TAGTGGCGCT ATTAGGGGAG AATGGTGCAG GGAAATCAAC CTTAATTAAG GCGTTGACTG GCGTTTATCA CCGTTCGTCT GGTGATATTA TCCTCGATGG TCTGGCGATT AATCCTGTTA ATACTGCCCA CGCTCAGTCA TTGGGGATTG GCACGGTATA TCAGGAGGTC AATCTATTAC CGAATCTGTC CGTTGCGGCA AATCTATTTA TTGGTCGTGA ACCCACCCGC TGGGGCATCG TTGATCAACA TAAAATTCTG CGTCAGGCTG AAGCACTTTT ATTGAATTAT GGGCTGGTGA TTGATGTTAG CCATCCGCTT GGTAATTACT CCATTGCAGT ACAGCAAATT GTCGCTATTG CCAGAGCTAT TGATCTTTCC GCTAAAGTCT TAATTCTTGA TGAGCCCACC GCAAGCCTTG ATGCAAAAGA AGTTGATATG CTGCTGGATA TATTGCGGAA ATTGCGCGAT CGCGGCATTG GCATGATATT CGTCACGCAC TTTCTGGATC AGGTTTATCG CATTAGCGAC AGAATTACCG TTTTACGTAA TGGTCGACTC GTGGGGACAT TACCGGTTGA AGAATTACCG CGTATTGAAT TAGTCCAAAT GATGCTGGGA CACAGTTTTG ATGAAACGTT ATTGAAGCGG AGTGAACACA GTGACGTGGC GGGTGAACCC ATCGTGCAAT TTAAACACTA TGGTCGGCGT GGTTCGATTA ATGACTTCGA GCTTTCCGTG CGTCCAGGAG AAATTGTTGG ACTTGCTGGT CTACTGGGTT CCGGTCGGAC AGAAACCGCG CAGCTGATAT TTGGTATTAA CGTGCCTGAT GCCGGAGAAG CCAGAGTTGA TGGCAAACAA GTCAGCATTC GTACGCCGCG TGCAGCAGGG AAACTGGGCT TTGGTTATTG CCCTGAGGAT CGCAAGACTG ACGGCATTGT CGGTGCGGCA ACGGTACGAG AGAACATCAT TCTGGCGCTT CAGGCGCAGC GCGGCTGGTT GAAGCCTATT TCCTTGCGTG AACAAACTCG TATCGCTGAA AAATTTATCA ACCTATTAGG GATTCGTACG CCCAGCCCAG AGCAGGAAAT TCAGTATCTA TCGGGTGGGA ATCAGCAAAA AGTCCTGCTA TCGCGCTGGC TGGCAACAGA GCCGCGCTTT TTGATTCTGG ATGAGCCAAC GAGAGGGATT GATGTTGGTG CACATGCTGA AATCATTCGT CTTATCGAGA AGCTGTGTGA ACAGGGAATG GCGTTACTTG TTATTTCTTC TGAGCTGGAA GAACTGACAG GCTATGCCGA TCGCATCATC GTACTACGTG ACAGGCAACA CGTTGCACAT CTCGAACATA GCGAGATCTC GGTTGCCGCA GTGATGCAGG CTATCGCAGT ACAAACGGGA GCAGCCGATG ACAGACAATA A
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Protein sequence | METTRLLDIR GMSVEFPGVK ALDQVDFTLN RGEIVALLGE NGAGKSTLIK ALTGVYHRSS GDIILDGLAI NPVNTAHAQS LGIGTVYQEV NLLPNLSVAA NLFIGREPTR WGIVDQHKIL RQAEALLLNY GLVIDVSHPL GNYSIAVQQI VAIARAIDLS AKVLILDEPT ASLDAKEVDM LLDILRKLRD RGIGMIFVTH FLDQVYRISD RITVLRNGRL VGTLPVEELP RIELVQMMLG HSFDETLLKR SEHSDVAGEP IVQFKHYGRR GSINDFELSV RPGEIVGLAG LLGSGRTETA QLIFGINVPD AGEARVDGKQ VSIRTPRAAG KLGFGYCPED RKTDGIVGAA TVRENIILAL QAQRGWLKPI SLREQTRIAE KFINLLGIRT PSPEQEIQYL SGGNQQKVLL SRWLATEPRF LILDEPTRGI DVGAHAEIIR LIEKLCEQGM ALLVISSELE ELTGYADRII VLRDRQHVAH LEHSEISVAA VMQAIAVQTG AADDRQ
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