Gene PC1_4004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4004 
Symbol 
ID8134995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4518916 
End bp4520046 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content52% 
IMG OID644867315 
ProductTDP-4-oxo-6-deoxy-D-glucose transaminase 
Protein accessionYP_003019555 
Protein GI253690365 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID[TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCCAT TTAATGCGCC ACCGGTTGTC GGTACGGAAC TGGATTATAT GCAGGCTGCC 
ATGAGCAGCG GTAAATTGTG CGGTGATGGT GGGTTCACCC GCCGTTGTCA GCAGTGGCTG 
GAACATTATT CCGGCAGTAA AAAAGTCCTG CTCACGCCTT CCTGTACGGC TTCGCTAGAG 
ATGGCCGCTA TCCTGCTGGA TGTGAAGCCC GGCGATGAAG TGATCATGCC GAGCTATACC 
TTTGTTTCTA CCGCTAACGC CTTTGTGCTG CGCGGTGCGA AGATCGTGTT TGTTGATATC 
CGTCCGGATA CCATGAACAT TGACGAAACG AAAATCGAAG CGGCAATTAC GGAAAAAACG 
CGCATTATCG TGCCGGTTCA CTACGCAGGC GTGGCCTGCG AGATGGACGC GATTATGGCG 
CTGGCGAAGA AATACAATTT ATATGTCGTG GAAGATGCCG CACAGGGCGT GATGTCCAGC 
TACAAAGGCC GCGTTCTGGG TTCCATTGGT CACATCGGCT GCTTCAGCTT TCACGAAACC 
AAGAACTACA CCTCAGGCGG TGAGGGTGGC GCCACGCTGA TTAATGACGC CAGACTGGTG 
GATCGCGCGG AAATCATCCG TGAAAAAGGC ACTAACCGTA GCCAGTTTTT CCGTGGACAG 
GTGGATAAAT ACACGTGGCG TGATATCGGT TCAAGCTATC TGATGGCGGA TATTCAGGCT 
GCCTATCTCT GGGCACAGCT GGAGGCCGCG CGGCCGATCA ACGAGCGTCG CCTTAAACTG 
TGGCAGAACT ACTACGCGGC CTTCAAATCT CTGGCCGATG CCGGGCGTAT TACGTTGCCA 
ACCGTGCCTG CCAATGGCAT TCACAACGCG CACATGTTTT ATATCAAACT GCGCGATCAG 
GATGACCGCA GCGCGTTTAT CAATTACATG AAAGAAGCCG AAATCATGAC GGTCTTTCAT 
TATATTCCGC TGCACAGTTG CCCAGCTGGT TTGAATTTTG GTCATTTCTC CGGTGAAGAT 
CGCTATACCA CGCAGGAAAG TGAGCGGCTG GTGCGTTTAC CGCTGTTCTA TAACCTGTCG 
GACGTCAATC AGCGGACCGT CATCAATACC ATTCTGAGCT TCTTCTCCTG A
 
Protein sequence
MIPFNAPPVV GTELDYMQAA MSSGKLCGDG GFTRRCQQWL EHYSGSKKVL LTPSCTASLE 
MAAILLDVKP GDEVIMPSYT FVSTANAFVL RGAKIVFVDI RPDTMNIDET KIEAAITEKT 
RIIVPVHYAG VACEMDAIMA LAKKYNLYVV EDAAQGVMSS YKGRVLGSIG HIGCFSFHET 
KNYTSGGEGG ATLINDARLV DRAEIIREKG TNRSQFFRGQ VDKYTWRDIG SSYLMADIQA 
AYLWAQLEAA RPINERRLKL WQNYYAAFKS LADAGRITLP TVPANGIHNA HMFYIKLRDQ 
DDRSAFINYM KEAEIMTVFH YIPLHSCPAG LNFGHFSGED RYTTQESERL VRLPLFYNLS 
DVNQRTVINT ILSFFS