| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3991 |
|---|
| Symbol | |
|---|
| ID | 8134978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4504046 |
|---|
| End bp | 4504831 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644867298 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003019542 |
|---|
| Protein GI | 253690352 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAG CCGCAGATAC TGTAGTTAAA AATCACGTAA TGACAGACAG CAACGTCATC
ATTGAGATCG ACGCCGTCAG CAAATGGTAC GGCGCGTTTC AGGCGCTAAA TAACGTGACG
CTGAACGTGC AGAAAGGCGA GCGTGTGGTG ATTTGCGGCC CTTCCGGCTC CGGCAAATCC
ACGCTCATCC GCTGCATTAA CCGACTGGAA GAGCACCACG ACGGGCACAT CCGCGTAAAT
GGCATTGAGG TCAATGACAA CATCAAGAAC ATCAACCGCG TACGCTCCGG CATCGGTATG
CTGTTCCAGC AGTTCAATTT GTTTCCTCAT CTAAGCGTGC TGGATAACCT GACGATTGGC
CCGACGCTGG TCAAGCAGCG TAAGAAGCAG GAAGCCATCG ATTTAGCGAT GCACTATCTG
GAAAAGGTAC ATATCGCCAA TCAGGCGCAT AAATTCCCGG TACAGCTCTC TGGCGGCCAG
CAGCAGCGCG TGGCTATTGC CCGGGCGCTG TGCATGCAGC CGGAAATCAT GCTGTTTGAC
GAACCCACTT CTGCACTGGA TCCAGAGATG ATTAAAGAGG TGTTGGATGT GATGCTCGAT
TTGGCGGAAT CCGGTATGAC GATGATCGTC GTTACCCATG AGATGGGCTT TGCCAAAACG
GTTGCAGACA AAGTGATTCT GATGGCTGAC GGCAGCATCG TTGAATCCGC TCCACCGCAG
GACTTCTTCA ACACGCCCTC ACATCCGAGA ACGCGTCAGT TCCTGGATCA GATTTTAAGT
CATTAA
|
|---|
| Protein sequence | MSLAADTVVK NHVMTDSNVI IEIDAVSKWY GAFQALNNVT LNVQKGERVV ICGPSGSGKS
TLIRCINRLE EHHDGHIRVN GIEVNDNIKN INRVRSGIGM LFQQFNLFPH LSVLDNLTIG
PTLVKQRKKQ EAIDLAMHYL EKVHIANQAH KFPVQLSGGQ QQRVAIARAL CMQPEIMLFD
EPTSALDPEM IKEVLDVMLD LAESGMTMIV VTHEMGFAKT VADKVILMAD GSIVESAPPQ
DFFNTPSHPR TRQFLDQILS H
|
|---|
| |