Gene PC1_3990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3990 
Symbol 
ID8134977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4502894 
End bp4504003 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content56% 
IMG OID644867297 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_003019541 
Protein GI253690351 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTATTTC CGGCCCTGTC ACTCTCTGCC GTTCCCAGCC AACTGCGTAC GCCGCTGCTG 
TGGCTGCGCC GTCATCTATT CAGCAGCGTG CCGCAAACGG TGCTTACACT GTTACTCGCG 
GTGCTAATGT GGAACGTAGG CAATAAACTG CTGCACTGGG GCATTCTCGA TGCCGTGTGG 
TACACCGCTG ACCCGGACAT CTGTCGTGCA GCCGCTGGCG CCTGCTGGGC GGTGATCGTG 
GAAAAACATC GCCCTATTCT GTTTGGTCTT TATCCTTACG ATGAACACTG GCGTCTGGTG 
CTGGCGATGG GAATCTGGTT TTTGGCACTT GGCCTGTCGC TGATGCCACG CTTCTGGCAC 
TCACGCATCC TCTTACCGCT GTGGCTCGTC GCGGTAGTCA GCATTGCCAT CCTGATGTCC 
GGCGGCGTGT TTGGCTTATC TGACGTGCCT TCCAGCGAAT GGGGCGGACT GCCGCTGACG 
ATTCTGCTGT TTAGCGGCAC CGTCGTCATC GGTATGCCGG TTTCAGTTCT GCTGGCGCTG 
GGGCGTCGCT CACCGCTGCC TTTTCTACGC GGTCTGTCGG TTATTTTTAT CGAAGGTTTG 
CGCGGCGTAC CGCTCATCAC GATCCTGTTC GTCGCCGTTA ACGTCTTCCC GCTGTTTCTG 
CCCGCCGGAA TGGAAATCAA CAAGCTGCTG CGCATCATCA TTGGTATCGC GCTGTTTTTC 
GCCTGCTATC AGGCTGAGGT GATTCGCGGC GGTTTGCAGT CCGTACCACG CGGGCAATAC 
GAAGCGGCGA TGGCGCTCAA TCTCGGTTAT TGGCACACGA CGACTAAAAT CGTCCTGCCG 
CAGGCGCTGC GTATCTGCCT GCCTGCCATG ACCAACCATA TTATCGCCGC CATGAAGAAC 
ACCTCGTTCG TCATCATTAT CGGGCTGTTC GATATTCTCA CCGCCACCAG TTCAGTGATG 
CAAGACCCGC TATGGCGGCG CTATTACATT GAAACGTACC TTTTCATCTC GGCTATCTAT 
CTGCTGTTTG GCTTCTTGCT CTCACGCTAC GCGCTGTGGG TAGAAAAGCG CATCGATGCC 
AGCCGTAACC CAGAAACGTA TCACGGTTAA
 
Protein sequence
MLFPALSLSA VPSQLRTPLL WLRRHLFSSV PQTVLTLLLA VLMWNVGNKL LHWGILDAVW 
YTADPDICRA AAGACWAVIV EKHRPILFGL YPYDEHWRLV LAMGIWFLAL GLSLMPRFWH 
SRILLPLWLV AVVSIAILMS GGVFGLSDVP SSEWGGLPLT ILLFSGTVVI GMPVSVLLAL 
GRRSPLPFLR GLSVIFIEGL RGVPLITILF VAVNVFPLFL PAGMEINKLL RIIIGIALFF 
ACYQAEVIRG GLQSVPRGQY EAAMALNLGY WHTTTKIVLP QALRICLPAM TNHIIAAMKN 
TSFVIIIGLF DILTATSSVM QDPLWRRYYI ETYLFISAIY LLFGFLLSRY ALWVEKRIDA 
SRNPETYHG