| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3989 |
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| Symbol | |
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| ID | 8134976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 4501660 |
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| End bp | 4502883 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644867296 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003019540 |
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| Protein GI | 253690350 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAC CACACCCAAC GCTGCCGTCA GCCTCTGCAC CGTCGTGGCT GGGAACGCCA
TCTTATGCAC GCCGTCTGTT GAATGCGTTT GACAGCAAGT CGCTGCGCGC CTGGATTTAT
CAGTGCCTGC TCGGCCTCCT AATTGTCGCT TTCAGCTACT GGCTCTATGC CAACGTGGTC
GAAAACCTGC GCTCGCAAAA TATCGCAACA GGATTTGGCT TTCTTGACCA CACCGCGCAG
TTTGAGATCG GTGAAAAGCT CATCGCCTTT ACCCCACGCG ACAGTTACCT GCGCGCACTG
GGCGTCGGGT TACTGAATAC CCTGTACATC ACGCTGTGCG GCATCGTGCT CGCCACGCTG
CTGGGCTTCT CCGTCGGCAT CGCCCGCGTC TCTCGTAACT GGTTGCTGGC GCGGCTCGCC
GGAGGATACA TCGAGATGAT GCGCAATATT CCGGTGATCT TGCAGGTGAT TTTCTGGTCA
GTGGTGATCC GCAACTTGCC CTCACCGCGG GATGCTATCG AACTGGGTAA TCTGGGATTC
CTGACCAATC GCGGGCTGTC TTTTGCCGTT CCTGCCGCAC ACCACGGCTG GCTGTGGACG
GGAATCGCCC TGCTCGCCGC CGTACTGATT AGCCTGATCC TGAACCGCGT AGCGCGCTAT
GTTCGGGAAA GTCGCGGGCG CTCTCTGCCG ACAGGTCGTT TGACGCTGGC AGCCCTTATC
GGGCTACCAC TATTGGTCTG GTGGCTTTCC GGCGCACCAG CAGAGCTCGA TCGCCCGATC
TTGCGCGGCT TTAACTTTCG CGGCGGCTTT ACCGTCAGCC CTGAATTTAC AGCGCTGCTG
CTCGGCATTG CGCTCTATTC CTCCGCGTTT ATCGCAGAAA TCGTGCGGGC GGGGATTCAG
TCTATCCCCA AAGGTCAGTT GGAAGCGGCA CGAGCACTGT CTTTTTCGCC GTGGCACATG
ATGCGCCACA TCATTATCCC ACAGGCCATG CGTGTCATCG TTCCACCGCT GACCAGCCAG
TATGTCAGCC TGTCAAAAAA CAGCTCGATC GCGGTCGTGG TCGGTTACCC GGAACTGGCA
AACATCAGCA ATACGCTGAT GAACCAGACC GGTCAGGCAC TCGAAGTGAT AGCCATCATG
ATGGTGGTTT ATCTGACGGT CAGCATCGTG ACATCGCTGC TGATGAACCT GTTTAACCGC
GTCGTCGCCA TCAAAGAGCG CTGA
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| Protein sequence | MKSPHPTLPS ASAPSWLGTP SYARRLLNAF DSKSLRAWIY QCLLGLLIVA FSYWLYANVV
ENLRSQNIAT GFGFLDHTAQ FEIGEKLIAF TPRDSYLRAL GVGLLNTLYI TLCGIVLATL
LGFSVGIARV SRNWLLARLA GGYIEMMRNI PVILQVIFWS VVIRNLPSPR DAIELGNLGF
LTNRGLSFAV PAAHHGWLWT GIALLAAVLI SLILNRVARY VRESRGRSLP TGRLTLAALI
GLPLLVWWLS GAPAELDRPI LRGFNFRGGF TVSPEFTALL LGIALYSSAF IAEIVRAGIQ
SIPKGQLEAA RALSFSPWHM MRHIIIPQAM RVIVPPLTSQ YVSLSKNSSI AVVVGYPELA
NISNTLMNQT GQALEVIAIM MVVYLTVSIV TSLLMNLFNR VVAIKER
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