Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3964 |
Symbol | |
ID | 8134951 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4473292 |
End bp | 4475118 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644867271 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_003019515 |
Protein GI | 253690325 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.9333 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTACGG CGGAAGTATT GAATAAGGAA GCGCTGGCGG TTCAGGTTCT GCGGGACACG TTCGGCTACC AGCAATTCCG ACCGGGTCAG CAGGAAATTA TCAGCGCGAC GCTCAGTGGG CAGGATTGTC TGGTGATCAT GCCGACAGGC GGCGGCAAGT CGCTGTGCTA TCAAATCCCT GCACTGGTGA TGGACGGGCT GACGCTGGTG GTGTCCCCGC TGATTTCACT GATGAAAGAT CAGGTCGATC AGCTTCAGGC CTACGGCGTG TCGGCGGCCT GCCTGAATTC GACGCAAACG CGTGAACAGC AGCTTGAGGT GATGGCGGGT TGCCGTACCG GCCAGATCAA ATTGCTGTAT ATTGCGCCGG AACGTCTGAC GACAGACAGC TTCCTCGATC ATCTCGCCCA CTGGCAGATC GCCCTGATCG CGGTGGATGA AGCGCACTGC ATTTCCCAAT GGGGACACGA TTTCCGCCCT GAATACCGCG CTCTGGGGCA GATTAAACAG CGTTTTCCGC ATCTTCCTTT CATTGCTTTG ACGGCCACCG CTGACGAGAC CACGCGCAAC GATATCGTTC GCCTGCTGGA TCTTCAGTCG CCGCTCATTC AGATCAACAG TTTTGACCGC CCGAATATTC GCTACACGTT GGTAGAGAAA TTCAAACCGC TCGATCAGCT CTGGATGTTC GTGCAGGGGC AGCGGGGGAA AAGTGGCATC ATCTACTGCA ATAGCCGCTC CCGCGTGGAA GACATTTGCG CGCGTTTGCA GGCGCGAGGG CTGAGCGCAG GGGCTTATCA CGCCGGTCTG GATAACGAGC GGCGTGCGCA GGTGCAGGAA GCGTTTCTAC GTGACGATCT TCAGGTGGTA GTCGCGACCG TCGCATTTGG TATGGGCATC AACAAACCTA ACGTGCGGTT TGTGGTGCAC TTTGATATTC CGCGCAACAT CGAATCCTAC TATCAGGAAA CGGGGCGTGC CGGACGTGAC GGCCTCGCTG CTGAAGCTGC GTTGTTCTAC GATCCGGCGG ATATGGCGTG GCTGCGCCGC TGCCTGGAAG AAAAACCCGC CGGGCCGCAG TTGGATATCG AGCGCCATAA GCTCAATGCG ATGGGGGCGT TTGCCGAAGC GCAGACCTGC CGTCGTCTGG TGCTGCTGAA CTATTTCGGT GAAGGGCGCC AACAACCTTG CGGTAACTGC GATGTTTGTC TCGATCCGCC GAAGCGTTAC GACGGGCTGG TTGAGGCGCA AAAAGCGCTG TCCTGCGTGT ATCGCGTCGG TCAGCGCTTT GGTTTAGGGT ATATCGTCGA GGTGCTGCGC GGCGCAAATA ACCAGCGTAT CCGGGACTTC GGCCATGACA AGCTGCCGGT TTACGGCATC GGCAAGGATA AATCACAGGA GCATTGGGTC AGCGTACTGC GCCAACTGAT TCATCTGGGC TTGCTGAACC AGAACATCAC GATGCATTCC GCCGTACAGC TTACCGAATC GGCACGTCCG GTATTGCGGG GAGAAGTGCC GCTACAGCTG GCTGTGCCGC GAGTGATTAA CCTGAAGCCT CGCGCGAATC AGAAATCTTA TGGCGGAAAT TACGACCGTA AGCTGTTCGC CAAATTGCGC AAATTGCGTA AATCGATTGC GGATGAAGAC AATATTCCAC CTTACGTGGT GTTCAGCGAT GCGACGCTGC TGGAGATGGC GGAACTGATG CCGATCACCG CGGGTGAATT GCTGAATATC AACGGGGTCG GTCACCGTAA GCTTGAACGC TTTGGTGCGC CCTTCATGAA CATGATTCGC GATCATGTCG ATAATGATGA CGAGTAA
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Protein sequence | MSTAEVLNKE ALAVQVLRDT FGYQQFRPGQ QEIISATLSG QDCLVIMPTG GGKSLCYQIP ALVMDGLTLV VSPLISLMKD QVDQLQAYGV SAACLNSTQT REQQLEVMAG CRTGQIKLLY IAPERLTTDS FLDHLAHWQI ALIAVDEAHC ISQWGHDFRP EYRALGQIKQ RFPHLPFIAL TATADETTRN DIVRLLDLQS PLIQINSFDR PNIRYTLVEK FKPLDQLWMF VQGQRGKSGI IYCNSRSRVE DICARLQARG LSAGAYHAGL DNERRAQVQE AFLRDDLQVV VATVAFGMGI NKPNVRFVVH FDIPRNIESY YQETGRAGRD GLAAEAALFY DPADMAWLRR CLEEKPAGPQ LDIERHKLNA MGAFAEAQTC RRLVLLNYFG EGRQQPCGNC DVCLDPPKRY DGLVEAQKAL SCVYRVGQRF GLGYIVEVLR GANNQRIRDF GHDKLPVYGI GKDKSQEHWV SVLRQLIHLG LLNQNITMHS AVQLTESARP VLRGEVPLQL AVPRVINLKP RANQKSYGGN YDRKLFAKLR KLRKSIADED NIPPYVVFSD ATLLEMAELM PITAGELLNI NGVGHRKLER FGAPFMNMIR DHVDNDDE
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