| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3955 |
|---|
| Symbol | glpC |
|---|
| ID | 8134942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4462903 |
|---|
| End bp | 4464114 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644867262 |
|---|
| Product | sn-glycerol-3-phosphate dehydrogenase subunit C |
|---|
| Protein accession | YP_003019506 |
|---|
| Protein GI | 253690316 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | [TIGR03379] glycerol-3-phosphate dehydrogenase, anaerobic, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGC TTAGCGATAA CAGTTTTGAA GATTGTATCA AGTGTACGGT CTGTACCACG
TACTGCCCGG TATCGCGCGT GAACCCGCTT TATCCCGGCC CGAAACAGGC TGGACCTGAC
GGCGAACGCC TGCGGCGTAA AGACCCGGCA CTGTACGATG ACGCGTTGAA ATACTGCACC
AACTGTAAAC GCTGTGAAGT CGCATGTCCG TCGGATGTCA AAATTGGCGA CATTATTCAG
CGTGCGAAAG CGACGCACAG CGATCACAAG CCGACATTGC GCGACGCGAT TCTGAGCCAT
ACCGATCTTA TGGGGTCGAT TGCCACACCG TTTGCGCCGC TGGTCAACAC GGCTACCAGC
CTGAAGCCCG TGCGCCAACT GCTGGATAAG GCGTTGAAAA TCGACCATCG TCGTCAGTTG
CCGAAATACT CGTTTGGCAC CTTCCGGCGC TGGTATCGTC AGCAGGCGGC AAAGCAGCAG
GCCTATGATG AGCAGGTCGC TTATTTCCAC GGCTGCTATG TCAACTACAA CCATCCACAG
CTGGGTAAAG ATCTGGTTCA GGTCTTTAAC GCGATGGGCA TTGGCGTCCA GTTGTTGAAT
AAAGAGAAAT GCTGCGGCGT ACCGCTGATC GCCAATGGTT TTCACGACAA GGCCAGAAAG
CAGGCGCACG CTAATATCAA ATCGCTGGAT GAGGCGATCA ATCAGAAATC CCTGCCGGTG
GTCGCGACGT CATCCAGCTG TACGTTCACG CTGCGTGATG AATATCCGCA TCTGCTGGGT
GTGGATAACG GTCACGTGCG CGATGGCGTC GAACTGGTAA CGCGCCAGCT CTATCGCCTG
TTGGAAGAAG AAGGGCGAAC GCTGCCGCTG CGTAAATTGC CACTGCGGGT GGCGTATCAC
ACGCCCTGCC ATCTGGAGAG GATGGGCTGG ACGGCGTATA CCCTGGCGCT GCTGCAACGC
ATCCCCGGTC TTGAACTGGT GATGCTGGAT TCCCAGTGCT GCGGTATTGC TGGCACCTAT
GGTTTCAAGA AAGAGAATTA CACCACGTCG CAAGGCATTG GCGCACCGCT GTTCCAGCAG
ATTGAAGAGA GCGGCGTCGA TATCGTGGTA ACGGACTGTG AAACCTGTAA ATGGCAGATT
GAGATGTCGA CCAGCAAACG GTGTGAACAC CCCATCACGC TGCTAGCGAG GTCGTTAGCG
CAGCCAGAAT AA
|
|---|
| Protein sequence | MSLLSDNSFE DCIKCTVCTT YCPVSRVNPL YPGPKQAGPD GERLRRKDPA LYDDALKYCT
NCKRCEVACP SDVKIGDIIQ RAKATHSDHK PTLRDAILSH TDLMGSIATP FAPLVNTATS
LKPVRQLLDK ALKIDHRRQL PKYSFGTFRR WYRQQAAKQQ AYDEQVAYFH GCYVNYNHPQ
LGKDLVQVFN AMGIGVQLLN KEKCCGVPLI ANGFHDKARK QAHANIKSLD EAINQKSLPV
VATSSSCTFT LRDEYPHLLG VDNGHVRDGV ELVTRQLYRL LEEEGRTLPL RKLPLRVAYH
TPCHLERMGW TAYTLALLQR IPGLELVMLD SQCCGIAGTY GFKKENYTTS QGIGAPLFQQ
IEESGVDIVV TDCETCKWQI EMSTSKRCEH PITLLARSLA QPE
|
|---|
| |