| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3950 |
|---|
| Symbol | |
|---|
| ID | 8134937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4456480 |
|---|
| End bp | 4457283 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644867257 |
|---|
| Product | phosphotransferase system PTS sorbose-specific IIC subunit |
|---|
| Protein accession | YP_003019501 |
|---|
| Protein GI | 253690311 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3715] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACAA CAGCACTTCT TATTGCATTG GTGATGTATA TCGCCAAGTT TGCCGACCAC
ACGCTAGGGC AGCCACTGAT TGAACGCCCG CTGATTTGTG GTGCGATGGT GGGGTTTGTC
CTGGGTGATT TCCAGCAGGG CATCATCATT GGTGCGACGC TGGAACTCAT TTTCCTCGGC
ACTATCACCA TCGGCGGCTC GGTGCCCGCT GACCTTGCGG TCGGCTCGGT ACTGGCTACG
GCTTTTACTA TTTTAACGAA AGCCGAACCC GCCGTTGCCG TCGCGCTGGC ATTGCCGATT
AGTTTATTGG CGGTCTTTGT CTATCAGGTC GAGAAGCTGG TTTATACCGG TCTGGTCGAG
AAATACGATG CGCTGCTTGA GGAGGGCAGA GATCGCGCTG CACTTGGGAT GACGCTAGGG
ATGACGCTGT TCTACGGCGT ACCGTTTGCG GTGATCGCAT TCTTTGGGGT GCTGTATGGG
ACGGACGTCA TTCGCAGCCT GGTGGAAAGC ATTCCTGGCA CGGTGATGCG TGGCATGACC
GCCGTCGGAG GGATTTTACC CGCTTTAGGT TTTGCCATTC TTCTTCAGGC GTTGTGGAAC
CGTAATATCG CGGCTTTCTT CTTTATCGGT TTTGCCATGG CCGCCTACTT AAAACTGCCC
ATCATGGGGA TCGCGATTAT TGCCGCCTCT GTCGCCGTTT ACCTGTGTTT TAACGAGTTC
AACCAGCTCA AAGCCAACAA ACAGAATGCT GCTACTGCTC CGACGGCTTC TGTAGACGAT
AAGGATGGGT TCTTCAATGA CTGA
|
|---|
| Protein sequence | MLTTALLIAL VMYIAKFADH TLGQPLIERP LICGAMVGFV LGDFQQGIII GATLELIFLG
TITIGGSVPA DLAVGSVLAT AFTILTKAEP AVAVALALPI SLLAVFVYQV EKLVYTGLVE
KYDALLEEGR DRAALGMTLG MTLFYGVPFA VIAFFGVLYG TDVIRSLVES IPGTVMRGMT
AVGGILPALG FAILLQALWN RNIAAFFFIG FAMAAYLKLP IMGIAIIAAS VAVYLCFNEF
NQLKANKQNA ATAPTASVDD KDGFFND
|
|---|
| |