| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3945 |
|---|
| Symbol | |
|---|
| ID | 8134932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4449937 |
|---|
| End bp | 4450632 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644867252 |
|---|
| Product | Pirin domain protein |
|---|
| Protein accession | YP_003019496 |
|---|
| Protein GI | 253690306 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1741] Pirin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTATT TACGTCAAGC GCAAGATCGC GGACATGCGA ATCACGGCTG GCTCGACAGC
TGGCACACGT TCTCCTTTGC CGATTATTAC GATCCTGATT TCATGGGGTT TTCGGCACTG
CGCGTCATTA ATGAAGACGT TATCGAAGGC GGGCAGGGCT TTGGCACACA TCCGCACAAA
GATATGGAAA TTCTGACCTA TGTTTTATCC GGTGCCGTTG AGCATCAGGA CAGCATGGGA
AATAAAGAGC AGGTGCCAGC AGGCGAATTC CAGATTATGA GTGCGGGCAC CGGTATTCGT
CACTCTGAAT ACAATGCCAG CAAGGACGAA CCGCTGCATC TGTACCAAAT CTGGATTATC
CCGGAAAAAA CCGGGCTGAC GCCGCGCTAC GAGCAGAAAC GCTTTGATGT GCAGCAAGGA
CGCCAGTTAG TGCTGTCACC GGATGCGCGT GAAGGCTCGC TGAAAGTCTT TCAGGATATG
ACGCTGTGGC GCTGGGCGCT GAAAGCGCAG GAGCAATCGG TGTATCAGAT TCAGGCTGAC
CGTCGCGTCT GGGTTCAGGT GGTGCGTGGT ACGGTAGAGA TTAACGGCCA GAAAGCGGAA
ACCAGCGATG CGTTCGCAGT CTGGGACGAA ACGGCGATTT CTGTTCATGC CAGCGAAGAC
AGTGAAATTC TGCTGTTTGA TTTGCCGCCG GTATAA
|
|---|
| Protein sequence | MIYLRQAQDR GHANHGWLDS WHTFSFADYY DPDFMGFSAL RVINEDVIEG GQGFGTHPHK
DMEILTYVLS GAVEHQDSMG NKEQVPAGEF QIMSAGTGIR HSEYNASKDE PLHLYQIWII
PEKTGLTPRY EQKRFDVQQG RQLVLSPDAR EGSLKVFQDM TLWRWALKAQ EQSVYQIQAD
RRVWVQVVRG TVEINGQKAE TSDAFAVWDE TAISVHASED SEILLFDLPP V
|
|---|
| |