Gene PC1_3922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3922 
Symbol 
ID8134909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4417057 
End bp4417671 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content52% 
IMG OID644867229 
ProductLysine exporter protein (LYSE/YGGA) 
Protein accessionYP_003019473 
Protein GI253690283 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.325521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATTC ATGTATGGTT TTACTTCGCG CTTGCCTGTT GCGGCCTTGC TCTGACCCCT 
GGGCCGAATG CGCTACTGGT CATCACGCAC AGTATTCGAT TCGGGCCTGC TATCACCCTG 
TATACCATTT TGGGCGGCAT ACTGGCCTTC GTGCTGCTGA TGACGGTGTC CCTGTTTGGC 
ATTGACGTGT TGCTTAACAT GTACCCTTCT TTCCTGACTT ACCTAAAATT TGCCGGCGGC 
ATGTATCTCA TCTGGCTGGG TTTCAGGCAG TGGCGGTTAA GGACGTTAAA TATCGGTGAG 
TCTGCGCCAT TGGCCGCATC GATAAATCGG TTATCTCTTT TTACTCAGGG TGCTGCGTCG 
GCAGGGGCGA ATCCGAAAGT CTTCTTATTC TTCGGGGCAT TTCTCTCTCA ATTTATCGAT 
CCGACAAAGG ACACATTACT GCAATTTGTC GTGATGGTTG CCACCTTTGC CGCTGTGGAG 
TTTCTGGTTG AACTGGCTAT CAACCTGACG GCGGGACGAT TCCGGGCTTA CCTTGCCGTG 
CATGGCAAAG CTTTTAGTCT GGTCTGCGGC GCCATCTTTA TGACGGTTGG CGGGCTGGTG 
CTGTTTATGC CGTAA
 
Protein sequence
MDIHVWFYFA LACCGLALTP GPNALLVITH SIRFGPAITL YTILGGILAF VLLMTVSLFG 
IDVLLNMYPS FLTYLKFAGG MYLIWLGFRQ WRLRTLNIGE SAPLAASINR LSLFTQGAAS 
AGANPKVFLF FGAFLSQFID PTKDTLLQFV VMVATFAAVE FLVELAINLT AGRFRAYLAV 
HGKAFSLVCG AIFMTVGGLV LFMP