| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3884 |
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| Symbol | hofQ |
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| ID | 8134871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4370202 |
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| End bp | 4371476 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644867191 |
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| Product | putative outer membrane porin HofQ |
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| Protein accession | YP_003019435 |
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| Protein GI | 253690245 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.366874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATATTA ATATGTTATG TCAGGTGCTG GTATGGGGCG GGCTGCTTTT TCTTGCCGCG
TCGTTTCAGG CTCGTGCGGA AAATTCGGTA TCAATGGCGT TTGAGGATTC GCCGATACCG
CGGGTACTCC AGGCGTTAGC CGAGCACCAG CAGCTAAATG TTGTGATCGC GCCGGGCGTG
ACGGGGAACC TGAGCGTAAG GTTGGCTGAA GTACCGTGGC AGCAGGCGCT GGATATTGTT
CTGCGCATGG GTAAGCTCAG TGCAGAACGC AACGGTAACG TGCTGTTGGT TTTCCCTGCC
GGGCACCTTG AATCCTTACA GAAGGAACGG GACGAGCGTA TGGCGGAACA GGAGCAGAAA
TTACCGCTGC ACAATATCTC AGTCGCATTG CAGTATGCCG ATGCGGCAGA CGTGGCAGCC
AGCGTTCAGG CTCAGCGTGG AACATTGCTC TCTGCACGCG GCAGCGTAAC GGTGGATAAA
CGAACGAATA CGTTATTGAT TCGCGATACG GAAGACGCTT TGGCACAGCT CGAACCGTGG
GTGAAGGAGC TCGATCTCCC TTTAGCGCAG GTGCAACTGG CCGCGCATAT TGTCACCATC
AGCAGTGAAC ACCTTCAGGA ACTGGGCGTT AACTGGGGGC TGGGTGAAGG GAGTGCGGCG
AATAATGCAC TCAGGCTGAA TAATTTTAAT GTCGGCCTGC CAGTGGATAC GCCAGCAATC
AATGCGGGAT TCCATTTAGC ACGATTGAAT GGTCGCCTGC TGGATCTGGA ACTCATGGCG
TTGGAGCAGG AAAGTCAGGT CGAAATTATT GCCAGCCCCC GGCTGTTTAC CGCACACCAG
CAGACCGCCA GTATTAAACA AGGTACGGAA ATTCCGTATC AGGTCTCCAG CGGTGCCAGC
GGATCGACGT CTATTGAATT TAAAGAAGCG GTGCTCGGAA TGGAGGTCAC GCCGGATATT
TTGCGTGCCG GACGGATTAC GCTGAATCTG AAAATCAGTC AAAACATGCC GGGGCAGACG
ATTAAGCAGG GCGATAATGG CGAAGCCTTA GCGATCGATA AACAGGAGAT CCAAACTCAG
GTGACGGTCG CCGATGGAGA AACTATCGTA TTAGGCGGTA TTTTCCAGCA GCAGAAAAAG
AGCAGCGACA GACAGGTACC CATATTGGGT GAGGTTCCCG TATTTGGTCA CCTGTTCAGA
AACCATACTC AACAGCACAC GCGACGAGAA TTGGTCATTT TCATTACGCC GACGCTGATA
CCCGCCTCAT CGTGA
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| Protein sequence | MNINMLCQVL VWGGLLFLAA SFQARAENSV SMAFEDSPIP RVLQALAEHQ QLNVVIAPGV
TGNLSVRLAE VPWQQALDIV LRMGKLSAER NGNVLLVFPA GHLESLQKER DERMAEQEQK
LPLHNISVAL QYADAADVAA SVQAQRGTLL SARGSVTVDK RTNTLLIRDT EDALAQLEPW
VKELDLPLAQ VQLAAHIVTI SSEHLQELGV NWGLGEGSAA NNALRLNNFN VGLPVDTPAI
NAGFHLARLN GRLLDLELMA LEQESQVEII ASPRLFTAHQ QTASIKQGTE IPYQVSSGAS
GSTSIEFKEA VLGMEVTPDI LRAGRITLNL KISQNMPGQT IKQGDNGEAL AIDKQEIQTQ
VTVADGETIV LGGIFQQQKK SSDRQVPILG EVPVFGHLFR NHTQQHTRRE LVIFITPTLI
PASS
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