Gene PC1_3861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3861 
Symbol 
ID8134848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4344288 
End bp4345583 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content55% 
IMG OID644867168 
Productpectate lyase 
Protein accessionYP_003019412 
Protein GI253690222 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.454243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTT CTCTTCTGTC CGCCGCGCTG TTCAGCAGCA GCGTCGTATT CAGTGCTGGA 
TTAGTATTCA GTATCGGCAT ACCGATGGCT AACGCTGCCA CACCGGCAGC ACCAGAGTTG 
AAAGGATTCG GGACGGATAC CGTCGCAGGC AGCGGTGGGC GAATTATTCG CGTCACAACG 
CTGGCCTCTT CTGGGGCTGG TTCACTCCGG GAAGCGCTGG CCGCCAAAGG GCCGCGTATT 
ATTGTTTTTG AGGTTGGCGG CATTATCGAC CTGAATAAAA GTGACCTCCG CTTAACGGAG 
CCGTTTGTCA CTATTGCCGG CCAGACCGCC CCTTCTCCCG GCATTACCAT CATTCGCGGC 
GGCATGGGAA TTAGCACGCA TGATGTGCTC ATGCAGCATA TCCGTTTTCG CATCGGCGAT 
GCCGGTACGG GTAAAAAAAG CGGCTTTGAA CGCGATGTTT CAATCAACGG TAAAGATGCC 
TACAACGTCG TGATCGACCA CTCCAGTTTC GCCTGGGGGA CAGACGAAAA CTTGTCTATC 
TCTGGCCCAC GCTATGACGG CCCACAGGGA ACCGCACACC GCATCACGCT CTCAAATAAT 
ATTGTTGCTG AAGGCTTATA CGACTCAGCT CATACCAAAG GCATTCACTC GATGGGCACG 
CTGGTTCACG ATAACGTGAC TGATGTGTCA ATCATTGGCA GCCTGTATGC GCACAACAAC 
GAGCGCAACG CCTGGTTCAA GGCGGGTTCA ACGGGTGTCA TGGTCAATAA CCTGATCTAC 
AACCCTGGCA TTTGGGGCGT TCGCGTTGGT GGCGTCAAAG GCGAGTGGGA AGGGAAAACC 
ATGCCCGCCA GCCCACGCGT CTCCGTTGCA GGCAACGTGA TGCATTACGG CGTGAATACC 
AAAGCAGGCT TAGGGCTGGT AGGAAGCAAC AGCTCCGGCG ATGTCTGGAT GTCAGATAAC 
CTCGCTTACG ATGCCAAGGG AAAAGCCGCG CCGCAAACCT CGGGCAGCGG GATTAATTTA 
CTCAAAGTCT CCCCGATTTG GCCTTCAGGC TTAACCGCAG CACCCGCCAG CGCCGTCACC 
AATCAGGTAC TACAAAGCGC AGGCGCACGA CCGAAAGATC GCGATGCCGT CGATAAACGT 
ATCGTAGAGA ATTTCAAACA GCGGACAGGT GGCTTCGTGA ACAGTCAGGA AGAGGTTGGC 
GGCTATCCCG TTGCAACCAC GACCTACCGT CAGTTGAACG TGCCGAGCAC AGGCGTAGAT 
GCCTGGTTAC AGCAAATGGC AAAAGCGCTG GAATAA
 
Protein sequence
MKRSLLSAAL FSSSVVFSAG LVFSIGIPMA NAATPAAPEL KGFGTDTVAG SGGRIIRVTT 
LASSGAGSLR EALAAKGPRI IVFEVGGIID LNKSDLRLTE PFVTIAGQTA PSPGITIIRG 
GMGISTHDVL MQHIRFRIGD AGTGKKSGFE RDVSINGKDA YNVVIDHSSF AWGTDENLSI 
SGPRYDGPQG TAHRITLSNN IVAEGLYDSA HTKGIHSMGT LVHDNVTDVS IIGSLYAHNN 
ERNAWFKAGS TGVMVNNLIY NPGIWGVRVG GVKGEWEGKT MPASPRVSVA GNVMHYGVNT 
KAGLGLVGSN SSGDVWMSDN LAYDAKGKAA PQTSGSGINL LKVSPIWPSG LTAAPASAVT 
NQVLQSAGAR PKDRDAVDKR IVENFKQRTG GFVNSQEEVG GYPVATTTYR QLNVPSTGVD 
AWLQQMAKAL E