Gene PC1_3797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3797 
Symbol 
ID8134784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4295100 
End bp4296089 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content50% 
IMG OID644867104 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_003019348 
Protein GI253690158 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.309403 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTGACAGA GTTTCTAAAA CCGCGCCTGG TTGATATCGA GCAAGTGAGT 
TCGACGCACG CCAAGGTGAC CCTTGAGCCA TTAGAGCGGG GCTTCGGCCA TACTCTTGGC 
AACGCACTGC GCCGTATTCT GCTTTCATCC ATGCCAGGTT GCGCGGTGAC CGAGGTTGAG 
ATTGATGGTG TACTGCATGA GTACAGCACC AAAGAAGGCG TACAGGAAGA TATCCTGGAA 
ATCCTGCTCA ACCTGAAAGG GCTGGCGGTG AGAGTTCAAG GCAAAGATGA AGTTATTCTT 
ACCCTGAATA AATCTGGCAT TGGCCCTGTG ACTGCAGCCG ACATCATCCA TGATGGTGAT 
GTCGAAATCG TCAAGCCGCA GCACTTAATT TGCCATCTGA CCGATGAAAA CGCATCTATT 
AGCATGCGTA TCAAAGTTCA ACGTGGTCGT GGTTATGTGC CGGCATCTGC CCGTATTCAT 
ACGGAAGAAG ATGAGCGCCC GATTGGTCGT CTGTTAGTTG ATGCTTGCTA CAGCCCTGTA 
GAGCGTATTG CCTACAATGT TGAAGCGGCT CGTGTAGAAC AGCGTACTGA CTTGGACAAG 
CTAGTCATCG AAATGGAAAC CAATGGCACG ATCGATCCTG AAGAGGCGAT CCGCCGTGCG 
GCTACCATTC TGGCTGAACA ACTTGAAGCT TTTGTTGACT TACGTGATGT TCGTCAGCCA 
GAAGTTAAAG AAGAGAAACC AGAATTCGAT CCGATTCTGC TGCGCCCTGT TGACGATCTG 
GAATTGACTG TCCGCTCTGC TAACTGCCTT AAGGCAGAAG CTATCCACTA CATCGGTGAT 
CTGGTACAGC GTACCGAGGT TGAGCTGCTC AAAACGCCTA ACCTGGGTAA AAAATCTCTT 
ACTGAGATTA AAGACGTACT GGCTTCCCGT GGTTTGTCTC TGGGCATGCG CCTGGAAAAC 
TGGCCACCGG CAAGCATTGC TGATGAGTAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADIIHDGD 
VEIVKPQHLI CHLTDENASI SMRIKVQRGR GYVPASARIH TEEDERPIGR LLVDACYSPV 
ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP 
EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL 
TEIKDVLASR GLSLGMRLEN WPPASIADE