Gene PC1_3786 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3786 
Symbol 
ID8134773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4286808 
End bp4287365 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content49% 
IMG OID644867093 
ProductDNA topoisomerase type IA zn finger domain protein 
Protein accessionYP_003019337 
Protein GI253690147 
COG category[L] Replication, recombination and repair 
COG ID[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.000331014 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAGC CCGTACTGTT TGCTGAAAAA AAACAGGAAA TATGCCCAGA CTGTGGGTCA 
GTGCTGGTTA TCCGTTCTGG CCGGCACGGC CCATTCTTAG GCTGCTCTGC GTATCCAGAA 
TGCGAATTTA TTCGCCCACT GAAATCGCAG GCTGATGGAC ATATCGTCAA AGTGTTGGAT 
GGGCAACAGT GCCCGCTTTG TCAGTCGACG TTGGTATTAA GGCAAGGCCG TTATGGGATG 
TTTATCGGCT GTGGCAATTA CCCTGAATGC CATCATACTG AGACTATCGA TCGCCCTGAT 
GACACGGCGA TTCGATGCCC ACAGTGTAAT GAAGGCACGT TGTTACAGCG TAAGTCTCGC 
TACGGTAAGG TGTTTCATTC TTGCGATCGC TATCCCGACT GCCAGTTTAC GTTAAACCAT 
AAGCCGATAG CGGGTGAATG CCCCTCGTGC CATTACGCCT TATTGTTTGA GAAAAAAACG 
GCACAAGGCA TCAAGCTATT TTGTGCCAGT AAATTATGTG GAAAGCCGGT AGCGGCAGAA 
GTTGATAAGA ATGAGTGA
 
Protein sequence
MAKPVLFAEK KQEICPDCGS VLVIRSGRHG PFLGCSAYPE CEFIRPLKSQ ADGHIVKVLD 
GQQCPLCQST LVLRQGRYGM FIGCGNYPEC HHTETIDRPD DTAIRCPQCN EGTLLQRKSR 
YGKVFHSCDR YPDCQFTLNH KPIAGECPSC HYALLFEKKT AQGIKLFCAS KLCGKPVAAE 
VDKNE