Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3784 |
Symbol | aroE |
ID | 8134771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4285399 |
End bp | 4286226 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644867091 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_003019335 |
Protein GI | 253690145 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000719849 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTGAAG TAACGTCTTT TGCAGTTTTT GGCAATCCGA TTGCGCATAG TAAATCACCT CGCATACATG AGCTATTTGC TGCACAGACG GGGATAACGT TAACGTACGA GCGCGTTTTA GCGCCTTTGG ATGATTTTGA GCAAGTGCTG CGTCAGTATT TTCTCAATTG TGCTGGTGGT GCGAATGTCA CTGCGCCCTT TAAAGAGCGT GCCTTTGCCG AATCTGATGA GCGTAGCGAA TGCGCGGCGC TTGCAGGGGC GGTTAATACA TTGAAGAGAC TGAGTGACGG GCGCCTGTTT GGTGATAATA CAGATGGCAT TGGTTTACTT AGCGATCTGC AACGATTGGC GCTGGTGAAG CCGTTGGATC GTGTGTTGCT GGTGGGGGCT GGCGGCGCGG CGCGTGGGGT TATCCAACCC TTACTGGCTT ATGGCTGTAC GGTTGTGCTG ACTAATAGGA CGTTTTCCAA GGCTGATGAA TTGGTTAAGG TCTTCAGTGG TATTGGGGAT ATTCATGCTG TTTCCCTCGA CGATTTGCAT GGTCTGTCAT TCGATCTGAT CATTAACGCG ACATCTTCTG GGATGTACGA CAGTATTCCT AATTTACCGC CAGAACTCAT TTCACCGGAA ACAGGCTGTT ATGACATGTT CTATCTACCG CAACTGACAC CTTTTTTGTC ATGGTGCGTA CAGCATGGTG CTATCCGTTA TGCCGATGGC TTGGGAATGT TGGTGGGGCA AGCGGCACAT GCGTTTAAGC TTTGGCATGG GGTGATGCCA GATGTAGAAC CAGTAATTGC TTTGCTAAAG CAGGATCTTG CTACGTGA
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Protein sequence | MSEVTSFAVF GNPIAHSKSP RIHELFAAQT GITLTYERVL APLDDFEQVL RQYFLNCAGG ANVTAPFKER AFAESDERSE CAALAGAVNT LKRLSDGRLF GDNTDGIGLL SDLQRLALVK PLDRVLLVGA GGAARGVIQP LLAYGCTVVL TNRTFSKADE LVKVFSGIGD IHAVSLDDLH GLSFDLIINA TSSGMYDSIP NLPPELISPE TGCYDMFYLP QLTPFLSWCV QHGAIRYADG LGMLVGQAAH AFKLWHGVMP DVEPVIALLK QDLAT
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