Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3724 |
Symbol | |
ID | 8134704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4203296 |
End bp | 4204969 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644867024 |
Product | cell wall hydrolase/autolysin |
Protein accession | YP_003019275 |
Protein GI | 253690085 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0816524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAGTC GTATGGTTAC GCTGTTCATC GGCGTATGGC TGTTGCTGGC AGGGGCTGCG TGGGCAGCGA ATCTGTCGGA CATTAAGGTA GACAATGCCT CAGGTCAGGC CACGGTGCGC CTGAGCTTTA GCGGTCAGCC TATTTATGCT TTTTTCCCGC TGAGTAACCC TGCCAGAGTG GTCATTGATA TTCGTCAGAC CGGCGTCATT CAAGGCCTGC CATTGGATTT CAGCGGGCAA AACCTGATTA AGCGTGTACG TACCAGCAAT GCGCAGGATG CACAAAGCCT GCGTTTGGTG CTGGATTTGA CTCAGGCGGC TAAAACGCGA GCGGTGACGC AAAAAGAAGG ATCGGGCTAC GTTGTGGTTT TCACCATCAC CGGTGATAAA GCGAAAACGG TACCAGTCTC AGCGCCTCCG GCTTCGCGGC AGCAAAATAG CGCACCAGCA GAGCCCGCCA AAAATCCGTT TACCAATAAA CCTACCGTGG TCGTTAGTAG CAGTTCGTCA TCGACTACCC GCGCGCCGGT TCGGCAGGGG AATGAACGTG TTGTTGTGGC GATTGATGCC GGTCACGGCG GGCAGGATCC TGGGGCGATT GGCCCGAACG GTCTGAGGGA GAAAAATGTC ACCATTTCTA TCGCCCGTAA GCTACAAGCC TTACTGAATA GCGACCCGGC CTTTAAAGGT GTGCTGACGC GTGACGGCGA CTACTTTATT TCCGTCATGG GACGTTCAGA CGTGGCGCGC AAGCAGGGTG CGAATCTGTT AGTGTCGATT CACGCGGATG CCGCGCCGAA TCGTAATGCC AAAGGCGCCT CCGTTTGGGT GCTGTCCAAC CGCCGTGCGA ACAGCGAAAT GGCAAACTGG CTGGAACAGC ACGAGAAACA GTCTGAACTG TTGGGCGGCG CGGGCGATCT GTTAGCGAAC AGCAGCGCCG ATCCTTATCT CAGCCAGGCG GTACTGGATC TGCAATTTGG TCACTCCCAG CGTGTGGGAT ATGACGTGGC GACGAAAGTA CTGCGCGAAC TCCAGCGTGT CGGTGGGCTG CATAAACGAC GCCCAGAGCA CGCCAGTTTA GGGGTGTTGC GTTCGCCGGA TATTCCTTCT CTGCTGGTGG AGACCGGATT TATCAGTAAC GTTGCAGAAG AGCGACTGCT GGGCAGTAAC GACTATCAGG AAAAAATCGC CAACGCGATT TATCAGGGGC TGAGGGGGTA CTTCCAAACG CACCCGATGC AATCCCTCCC AAAGCAGGAA AGCCGCCCAC TACAGTCGGC GGCAAGTGAT ACCGCAACGT CGAGTGGTAA CGTCAGCACA GCAAAAGCAA GTGCGGGCAG CACGCGTCAT ACCGTTGCGC GTGGCGAAAC ACTTTCTTCT ATTGCGCGGC GTTATGGCGT CAGCCTCGCA GCCATGCGTG ATGTGAATAA GCTGAACAAG GATATCGTCT GGGTTGGACA GCGCCTGAAT ATTCCGGCGA CAGGGACGAA ACAGACGGCA TCAACCCCAG CGCCCAAAAA GGCAGCGCCA GTGAAGCATA AGGTCGTAAA GGGTGATAGC CTGAGTGCGA TCGCTGCCCG TTACGGTGTC AGCATGAAAG ATATCCAACA GGCGAATAAT ATGCGTTCCG GCACGGTACA ACTGGGGCAA ACGCTGATTA TTCCGTCCGC CTGA
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Protein sequence | MMSRMVTLFI GVWLLLAGAA WAANLSDIKV DNASGQATVR LSFSGQPIYA FFPLSNPARV VIDIRQTGVI QGLPLDFSGQ NLIKRVRTSN AQDAQSLRLV LDLTQAAKTR AVTQKEGSGY VVVFTITGDK AKTVPVSAPP ASRQQNSAPA EPAKNPFTNK PTVVVSSSSS STTRAPVRQG NERVVVAIDA GHGGQDPGAI GPNGLREKNV TISIARKLQA LLNSDPAFKG VLTRDGDYFI SVMGRSDVAR KQGANLLVSI HADAAPNRNA KGASVWVLSN RRANSEMANW LEQHEKQSEL LGGAGDLLAN SSADPYLSQA VLDLQFGHSQ RVGYDVATKV LRELQRVGGL HKRRPEHASL GVLRSPDIPS LLVETGFISN VAEERLLGSN DYQEKIANAI YQGLRGYFQT HPMQSLPKQE SRPLQSAASD TATSSGNVST AKASAGSTRH TVARGETLSS IARRYGVSLA AMRDVNKLNK DIVWVGQRLN IPATGTKQTA STPAPKKAAP VKHKVVKGDS LSAIAARYGV SMKDIQQANN MRSGTVQLGQ TLIIPSA
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