Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3706 |
Symbol | |
ID | 8134686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4183488 |
End bp | 4185470 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644867006 |
Product | arginine decarboxylase |
Protein accession | YP_003019257 |
Protein GI | 253690067 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0526106 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGACG ACATGATTCA TCACGGCTCG TCAGCGACGG GTAAACATGA AAATTTGCGC TCTATGCAGG AGGTTGCCAT GAATGACCGT AATGCCAGCG AAATGCTTCG TACCTACAAT ATTGCCTGGT GGGGCAATAA TTACTATGAC GTCAATGAGC TTGGTCACAT TAGCGTGTGC CCGGATCCTG ACGTACCAGA AGCTCGCGTC GATCTGGCCA GACTGGTCAA AGATATGCAG AGGGATAACC ATCAGCGCCT GCCTGCGCTG TTCTGCTTTC CGCAAATTCT TCAGCATCGC CTGCGTTCTA TTAACGCTGC GTTTAAACAG GCTCGCGAAT CATTTGGCTA TGAAGGCGGT TACTTTCTGG TTTATCCGAT CAAGGTTAAC CAGCATCGCC GCGTCATTGA GTCACTGGCT AATTCCGGAG AACCGTTAGG GCTGGAGGCG GGTTCAAAAG CCGAGCTGAT GGCGGTACTG GGTCATGCCG GTATGACGCG CACCGTGATT GTGTGTAACG GCTACAAAGA CCGTGAATAT ATCCGTCTGG CACTGATCGG CGAAAAGCTG GGCCACAAGG TTTATCTGGT CATCGAGAAG ATGTCCGAAA TTCGTCTGGT GCTGGAAGAG GCCGAGCGTT TGAATGTGGT GCCACGTCTT GGCGTCCGTG CTCGTCTGGC TTCTCAGGGA TCGGGCAAAT GGCAATCCAG CGGCGGCGAA AAATCCAAGT TTGGTTTGGC GGCGATTCAG GTGCTGCAAC TGGTTGAGAT GCTGCGCGAA GCCGGGAAGC TGGATAGCCT GCAACTGCTG CATTTCCATC TGGGCTCCCA GTTGGCAAAT ATCCGTGACA TCGCGACGGG CGTGCGTGAA TCCGCGCGCT TCTATGTCGA ACTGCATAAG CTGGGTGTGA ATATCCAGTG CTTTGACGTC GGTGGCGGCT TAGGCGTGGA TTATGAAGGC ACGCGCTCTC AGTCCGATTG TTCAGTGAAC TATGGCCTGA ACGAGTACGC CAACAACGTG ATTTGGGGTA TCGGCGATGC CTGTAACGAA CACGGGTTGC CGCATCCGAC GGTGATCACC GAATCCGGCC GTGCAGTAAC CGCGCACCAT ACCGTGTTGG TTTCCAATAT CATCGGTGTG GAACGCAACG AGTTCAGTGA GCCGACTGAG CCGGAAGAAG ATGCGCCGCG CGCGCTGGAG AGCCTGTGGT CGACCTGGAA GGAAATCAAG CAGCCAGGAA AACGCCGTTC GCTGCGTGAG TGGCTGCACG ACAGCCAGAT GGATTTGCAC GATGTGCATA CCCAGTACAC GCACGGTATG TTGGATCTGA CACAGCGCGC CAAAGCAGAG CAGCTTTATC TGAGCATCTG CCAGATGATT CAGGAGCAGT TGGATCCGAG CAACCGCGCA CACCGGCCGG TGATTGATGA ATTACAGGAG CGCATGGCTG ACAAGCTGTA TGTCAACTTC TCGCTGTTCC AATCAATGCC GGACGCATGG GGTATCGATC AGCTGTTCCC AGTACTGCCG CTGGAAGGGC TGGATAAACC GCCTGAGCGT CGTGCTGTGC TGCTGGATAT CACCTGTGAC TCCGATGGCA CGATCGATCA TTATGTCGAT GGCGACGGAA TCGCGACGAC GATGCCAATG CCGCCTTACG ATCCAGAAAA TCCGCCGCTG CTGGGCTTCT TTATGGTCGG CGCCTATCAG GAAATTCTGG GGAACATGCA TAACCTGTTC GGTGATACGT CCACCGTTGA CGTGTTTGTC TTCCAGGATG GTACGGTTGA GATTGAAGAA TCCGACGAAG GCAATACGGT TGCCGACATG CTGGAGTATG TGCAGCTTGA CCCTGAAGTG CTGATGACTC GCTTCCGCGA TCAGGTTAAA GAAACCGATC TGGATGCGGA GCTTCAGGCA CAGTTTATGG AAGAGTTTGA AACCGGGCTG TACGGCTATA CTTATTTGGA AGATGAAGAG TGA
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Protein sequence | MSDDMIHHGS SATGKHENLR SMQEVAMNDR NASEMLRTYN IAWWGNNYYD VNELGHISVC PDPDVPEARV DLARLVKDMQ RDNHQRLPAL FCFPQILQHR LRSINAAFKQ ARESFGYEGG YFLVYPIKVN QHRRVIESLA NSGEPLGLEA GSKAELMAVL GHAGMTRTVI VCNGYKDREY IRLALIGEKL GHKVYLVIEK MSEIRLVLEE AERLNVVPRL GVRARLASQG SGKWQSSGGE KSKFGLAAIQ VLQLVEMLRE AGKLDSLQLL HFHLGSQLAN IRDIATGVRE SARFYVELHK LGVNIQCFDV GGGLGVDYEG TRSQSDCSVN YGLNEYANNV IWGIGDACNE HGLPHPTVIT ESGRAVTAHH TVLVSNIIGV ERNEFSEPTE PEEDAPRALE SLWSTWKEIK QPGKRRSLRE WLHDSQMDLH DVHTQYTHGM LDLTQRAKAE QLYLSICQMI QEQLDPSNRA HRPVIDELQE RMADKLYVNF SLFQSMPDAW GIDQLFPVLP LEGLDKPPER RAVLLDITCD SDGTIDHYVD GDGIATTMPM PPYDPENPPL LGFFMVGAYQ EILGNMHNLF GDTSTVDVFV FQDGTVEIEE SDEGNTVADM LEYVQLDPEV LMTRFRDQVK ETDLDAELQA QFMEEFETGL YGYTYLEDEE
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