Gene PC1_3706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3706 
Symbol 
ID8134686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4183488 
End bp4185470 
Gene Length1983 bp 
Protein Length660 aa 
Translation table11 
GC content54% 
IMG OID644867006 
Productarginine decarboxylase 
Protein accessionYP_003019257 
Protein GI253690067 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1166] Arginine decarboxylase (spermidine biosynthesis) 
TIGRFAM ID[TIGR01273] arginine decarboxylase, biosynthetic 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0526106 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGACG ACATGATTCA TCACGGCTCG TCAGCGACGG GTAAACATGA AAATTTGCGC 
TCTATGCAGG AGGTTGCCAT GAATGACCGT AATGCCAGCG AAATGCTTCG TACCTACAAT
ATTGCCTGGT GGGGCAATAA TTACTATGAC GTCAATGAGC TTGGTCACAT TAGCGTGTGC
CCGGATCCTG ACGTACCAGA AGCTCGCGTC GATCTGGCCA GACTGGTCAA AGATATGCAG
AGGGATAACC ATCAGCGCCT GCCTGCGCTG TTCTGCTTTC CGCAAATTCT TCAGCATCGC
CTGCGTTCTA TTAACGCTGC GTTTAAACAG GCTCGCGAAT CATTTGGCTA TGAAGGCGGT
TACTTTCTGG TTTATCCGAT CAAGGTTAAC CAGCATCGCC GCGTCATTGA GTCACTGGCT
AATTCCGGAG AACCGTTAGG GCTGGAGGCG GGTTCAAAAG CCGAGCTGAT GGCGGTACTG
GGTCATGCCG GTATGACGCG CACCGTGATT GTGTGTAACG GCTACAAAGA CCGTGAATAT
ATCCGTCTGG CACTGATCGG CGAAAAGCTG GGCCACAAGG TTTATCTGGT CATCGAGAAG
ATGTCCGAAA TTCGTCTGGT GCTGGAAGAG GCCGAGCGTT TGAATGTGGT GCCACGTCTT
GGCGTCCGTG CTCGTCTGGC TTCTCAGGGA TCGGGCAAAT GGCAATCCAG CGGCGGCGAA
AAATCCAAGT TTGGTTTGGC GGCGATTCAG GTGCTGCAAC TGGTTGAGAT GCTGCGCGAA
GCCGGGAAGC TGGATAGCCT GCAACTGCTG CATTTCCATC TGGGCTCCCA GTTGGCAAAT
ATCCGTGACA TCGCGACGGG CGTGCGTGAA TCCGCGCGCT TCTATGTCGA ACTGCATAAG
CTGGGTGTGA ATATCCAGTG CTTTGACGTC GGTGGCGGCT TAGGCGTGGA TTATGAAGGC
ACGCGCTCTC AGTCCGATTG TTCAGTGAAC TATGGCCTGA ACGAGTACGC CAACAACGTG
ATTTGGGGTA TCGGCGATGC CTGTAACGAA CACGGGTTGC CGCATCCGAC GGTGATCACC
GAATCCGGCC GTGCAGTAAC CGCGCACCAT ACCGTGTTGG TTTCCAATAT CATCGGTGTG
GAACGCAACG AGTTCAGTGA GCCGACTGAG CCGGAAGAAG ATGCGCCGCG CGCGCTGGAG
AGCCTGTGGT CGACCTGGAA GGAAATCAAG CAGCCAGGAA AACGCCGTTC GCTGCGTGAG
TGGCTGCACG ACAGCCAGAT GGATTTGCAC GATGTGCATA CCCAGTACAC GCACGGTATG
TTGGATCTGA CACAGCGCGC CAAAGCAGAG CAGCTTTATC TGAGCATCTG CCAGATGATT
CAGGAGCAGT TGGATCCGAG CAACCGCGCA CACCGGCCGG TGATTGATGA ATTACAGGAG
CGCATGGCTG ACAAGCTGTA TGTCAACTTC TCGCTGTTCC AATCAATGCC GGACGCATGG
GGTATCGATC AGCTGTTCCC AGTACTGCCG CTGGAAGGGC TGGATAAACC GCCTGAGCGT
CGTGCTGTGC TGCTGGATAT CACCTGTGAC TCCGATGGCA CGATCGATCA TTATGTCGAT
GGCGACGGAA TCGCGACGAC GATGCCAATG CCGCCTTACG ATCCAGAAAA TCCGCCGCTG
CTGGGCTTCT TTATGGTCGG CGCCTATCAG GAAATTCTGG GGAACATGCA TAACCTGTTC
GGTGATACGT CCACCGTTGA CGTGTTTGTC TTCCAGGATG GTACGGTTGA GATTGAAGAA
TCCGACGAAG GCAATACGGT TGCCGACATG CTGGAGTATG TGCAGCTTGA CCCTGAAGTG
CTGATGACTC GCTTCCGCGA TCAGGTTAAA GAAACCGATC TGGATGCGGA GCTTCAGGCA
CAGTTTATGG AAGAGTTTGA AACCGGGCTG TACGGCTATA CTTATTTGGA AGATGAAGAG
TGA
 
Protein sequence
MSDDMIHHGS SATGKHENLR SMQEVAMNDR NASEMLRTYN IAWWGNNYYD VNELGHISVC 
PDPDVPEARV DLARLVKDMQ RDNHQRLPAL FCFPQILQHR LRSINAAFKQ ARESFGYEGG
YFLVYPIKVN QHRRVIESLA NSGEPLGLEA GSKAELMAVL GHAGMTRTVI VCNGYKDREY
IRLALIGEKL GHKVYLVIEK MSEIRLVLEE AERLNVVPRL GVRARLASQG SGKWQSSGGE
KSKFGLAAIQ VLQLVEMLRE AGKLDSLQLL HFHLGSQLAN IRDIATGVRE SARFYVELHK
LGVNIQCFDV GGGLGVDYEG TRSQSDCSVN YGLNEYANNV IWGIGDACNE HGLPHPTVIT
ESGRAVTAHH TVLVSNIIGV ERNEFSEPTE PEEDAPRALE SLWSTWKEIK QPGKRRSLRE
WLHDSQMDLH DVHTQYTHGM LDLTQRAKAE QLYLSICQMI QEQLDPSNRA HRPVIDELQE
RMADKLYVNF SLFQSMPDAW GIDQLFPVLP LEGLDKPPER RAVLLDITCD SDGTIDHYVD
GDGIATTMPM PPYDPENPPL LGFFMVGAYQ EILGNMHNLF GDTSTVDVFV FQDGTVEIEE
SDEGNTVADM LEYVQLDPEV LMTRFRDQVK ETDLDAELQA QFMEEFETGL YGYTYLEDEE